These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGTACCAAGTTATCAAGGGTCAACGCAAATACTTCTCTTCGTAATGTGATATCTTGCGCTACGCTTTCTTTCACGGCGATATTTGCATTCACAACTGCTTGCAACGCATAAATAACCTCGTCAAAGTCAAAGATACTATCTTTCCTCTGCTTTATTTTGTACGGTCTAGGAATTATTAGTATGGAACGACCATGCTCTAACGCTTGCGTTTGTAAGATTGAGTTGACGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCTGAGATGGAGAATGGGAGATTCAATCAGATTTTTGTTGATGCAATATTAGAATTTGGAACTTCAATTCTAGAGAAGAACTCAGGAACTCGAGTTCAGGAACTAATAAGATGTTAGCATAAAAAAGATAATGCCTAAATTCCATAAAATTCAAAAGATTTCAATAGCCAAACCTAGAAGAGTAGTTGCAGCTCACTGGCGATGCTATGTGGCACATGAGAACACATTTGGGGTGCGAGTTTGGTTCATGTCTGATAGCCGAGTGCGTACCCATCGTACATCACTTGCTG] [+] EMBL BM595621 [CCGTACCAAGTTATCAAGGGTCAACGCAAATACTTCTCTTCGTAATGTGATATCTTGCGCTACGCTTTCTTTCACGGCGATATTTGCATTCACAACTGCTTGCAACGCATAAATAACCTCGTCAAAGTCAAAGATACTATCTTTCCTCTGCTTTATTTTGTACGGTCTAGGAATTATTAGTATGGAACGACCATGCTCTAACGCTTGCGTTTGTAAGATTGAGTTGACGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCTGAGATGGAGAATGGGAGATTCAATCAGATTTTTGTTGATGCAATATTAGAATTTGGAACTTCAATTCTAGAGAAGAACTCAGGAACTCGAGTTCAGGAACTAATAAGATGTTAGCATAAAAAAGATAATGCCTAAATTCCATAAAATTCAAAAGATTTCAATAGCCAAACCTAGAAGAGTAGTTGCAGCTCACTGGCGATGCTATGTGGCACATGAGAACACATTTGGGGTGCGAGTTTGGTTCATGTCTGATAGCCGAGTGCGTACCCATCGTACATCACTTGCTG] consensusID : consensus_2487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [GCCCTAACGCTTGCGTTTGTAAAATTGAGTTGGCGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCGACAATGGGACCGACAAACAGGTAAAAAAACCCAGCAAACAGCAGATGTATCCCCGGTTGCTCCCGGCAGACGATCCAGCGGGACGTGCGAAGGTATGGCCAGTGCCATAAACACCGTCCGCAGTCCCTTGTTGAAACCGATCCAGCAAGCGATGGCCAACACCACGCCGTAGCTGTGGAAGTGTGCCAAAACCACGCGTCCCAGCGCCATGTTGATCACACCGACAAGAAAGAAGGTGCGGTTCTGCCACTTGATGCGGTCCGCGATCAGCGGCACCAGACACCGGCAGCAGATGTCGGTCATGCCGAGCACGGACATGGCGACCGCGATCTGGTCCCGCGTGCAGCCAAAGTCCGCCAGCACGAAGGGTGTCAGGATGGAGAAGTTCAGCTCGGCAAAGTTGGCGATCGTGATGCCGATCATTATGTTGACGTAGATTTGGTC] [+] EMBL CNS08HKU [GCCCTAACGCTTGCGTTTGTAAAATTGAGTTGGCGAAACTCACCTTCCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCCAGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCGTAGTTAGTCGTATCCCTCACATAGCCGACAATGGGACCGACAAACAGGTAAAAAAACCCAGCAAACAGCAGATGTATCCCCGGTTGCTCCCGGCAGACGATCCAGCGGGACGTGCGAAGGTATGGCCAGTGCCATAAACACCGTCCGCAGTCCCTTGTTGAAACCGATCCAGCAAGCGATGGCCAACACCACGCCGTAGCTGTGGAAGTGTGCCAAAACCACGCGTCCCAGCGCCATGTTGATCACACCGACAAGAAAGAAGGTGCGGTTCTGCCACTTGATGCGGTCCGCGATCAGCGGCACCAGACACCGGCAGCAGATGTCGGTCATGCCGAGCACGGACATGGCGACCGCGATCTGGTCCCGCGTGCAGCCAAAGTCCGCCAGCACGAAGGGTGTCAGGATGGAGAAGTTCAGCTCGGCAAAGTTGGCGATCGTGATGCCGATCATTATGTTGACGTAGATTTGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2487#0 CCGTACCAAGTTATCAAGGGTCAACGCAAATACTTCTCTTCGTAATGTGATATCTTGCGC 60 consensus_2487#1 ------------------------------------------------------------ consensus_2487#0 TACGCTTTCTTTCACGGCGATATTTGCATTCACAACTGCTTGCAACGCATAAATAACCTC 120 consensus_2487#1 ------------------------------------------------------------ consensus_2487#0 GTCAAAGTCAAAGATACTATCTTTCCTCTGCTTTATTTTGTACGGTCTAGGAATTATTAG 180 consensus_2487#1 ------------------------------------------------------------ consensus_2487#0 TATGGAACGACCATGCTCTAACGCTTGCGTTTGTAAGATTGAGTTGACGAAACTCACCTT 240 consensus_2487#1 --------------GCCCTAACGCTTGCGTTTGTAAAATTGAGTTGGCGAAACTCACCTT 46 ** ******************* ********* ************* consensus_2487#0 CCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCC 300 consensus_2487#1 CCGGTCGCATCTTTGACCTTCTCCCTGCGCTGCTGGCGGGGTGTAAAGTAGTACATCTCC 106 ************************************************************ consensus_2487#0 AGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCG 360 consensus_2487#1 AGTGCCCAGGAGATGGCCATCGTGTAGGTGGCGAGATTGAGGAAGTGTAGCGTCGTGGCG 166 ************************************************************ consensus_2487#0 TAGTTAGTCGTATCCCTCACATAGCCTGAGATGGAGAATGGGAGATTCAATCAGATTTTT 420 consensus_2487#1 TAGTTAGTCGTATCCCTCACATAGCCGACAATGG-GACCGACAAACAGGTAAAAAAACCC 225 ************************** **** ** * * * * * consensus_2487#0 GTTGATGCAATATTAGAATTTGGAACTTCAATTCTAGAGAAGAACTCAGGAACTCGAGTT 480 consensus_2487#1 AGCAA-ACAGCAGATGTATCCCCGGTTGC--TCCCGGCAGACGATCCAGCGGGACGTGCG 282 * ** * * ** * * * * * * * *** ** * consensus_2487#0 CAGGAACTAATAAGATGTTAGCATAAAAAAGATAATGCCTAAATTCCATAAAATT--CAA 538 consensus_2487#1 AAGGTATGGCCAGTGCCATAA-ACACCGTCCGCAGTCCCTTGTTGAAACCGATCCAGCAA 341 *** * * ** * * * * *** * * * *** consensus_2487#0 AAGATTTCAATAGCCAAACC-------TAGAAGAGTAGTTGCAGCTCAC-TGGCGATGCT 590 consensus_2487#1 GCGATGGCCAACACCACGCCGTAGCTGTGGAAGTGTGCCAAAACCACGCGTCCCAGCGCC 401 *** * * *** ** * **** ** * * * * * * ** consensus_2487#0 ATGTGGCACATGAGAACACATTTGG-GGTGCGAGTTTGGTTCATGTCTGATAGCCGAGTG 649 consensus_2487#1 ATGTTGATCACACCGACAAGAAAGAAGGTGCGGTTCTGCCACTTGA-TGCGGTCCGCGAT 460 **** * ** *** * ****** * ** * ** ** *** * consensus_2487#0 CGTACCCATCGTACATCACTTGCTG----------------------------------- 674 consensus_2487#1 CAGCGGCACCAGACACCGGCAGCAGATGTCGGTCATGCCGAGCACGGACATGGCGACCGC 520 * ** * *** * ** * consensus_2487#0 ------------------------------------------------------------ consensus_2487#1 GATCTGGTCCCGCGTGCAGCCAAAGTCCGCCAGCACGAAGGGTGTCAGGATGGAGAAGTT 580 consensus_2487#0 --------------------------------------------------------- consensus_2487#1 CAGCTCGGCAAAGTTGGCGATCGTGATGCCGATCATTATGTTGACGTAGATTTGGTC 637 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||