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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence
[GGCAGAATCCGCACGANGNAACTCCGGGCACAAACTGTCCCTCGCATCGTCATACGATTCCGTGCTGGAAGAGAATGAGGGTGAAAATCAACCGCCTACAATGGTTACCGGCCGTGGTGGTGATGATGCTAGAGGTTATGGTAATAATCAGTACCAATCCGCTATCAAGTACATCCACACCAATGATCCAGTTGTTGCTAACAATGTGCACGTGAGGCGCAAATCGGAAGATATGCTTTCGGGCAAATCACGATCAACACGCATACCGATCAAATCGTTCCTCTTCTCGAACACACCGGTCCGGTCAGGCCGGAATGAGTACGGCAGCTCATCATCATCCGCTTACTACGGTGGCGGGGGTGGTGAATATGGTGTATCCCGTGGGACTCCATCTGGCGGACCGTTGTCGTACTATTCCGACTCGAAGGACCGTGTCGTATCGATCCGTGTGAACAATCAGGCGACTAAGTCGCAAACCGGCAAACATGTTCGATGGTATCACTAATCGGTCTAATATTCCACAATCACATCAATCGGCATCCGGCGGTACAATGCCACGCCGTACGTCTGCTGGGTGGGGCCCAAGTCGANCTTGGCGATNATACGTTCACCACAGGCATCTGATGCGAACGATCAAACCGGCTGACAACGTTCAGTTCCGGCCCNGCGGAGGTCTTCCACTTTCCTAGGTGGGGAGCGAAAAATTGGGGTTAACCCNGGGTGGGGTNCGGGCAAANTAGGGCAACCCNGCNCAATTCNGGGGAATTGGACAAAAGCTAAGTTGCNAGCGCGAGTCTTAAACAGTCACNCGGGTGAGTTTGGGCATTTNGTCACA]
[+] EMBL BX468251 [GGCAGAATCCGCACGANGNAACTCCGGGCACAAACTGTCCCTCGCATCGTCATACGATTCCGTGCTGGAAGAGAATGAGGGTGAAAATCAACCGCCTACAATGGTTACCGGCCGTGGTGGTGATGATGCTAGAGGTTATGGTAATAATCAGTACCAATCCGCTATCAAGTACATCCACACCAATGATCCAGTTGTTGCTAACAATGTGCACGTGAGGCGCAAATCGGAAGATATGCTTTCGGGCAAATCACGATCAACACGCATACCGATCAAATCGTTCCTCTTCTCGAACACACCGGTCCGGTCAGGCCGGAATGAGTACGGCAGCTCATCATCATCCGCTTACTACGGTGGCGGGGGTGGTGAATATGGTGTATCCCGTGGGACTCCATCTGGCGGACCGTTGTCGTACTATTCCGACTCGAAGGACCGTGTCGTATCGATCCGTGTGAACAATCAGGCGACTAAGTCGCAAACCGGCAAACATGTTCGATGGTATCACTAATCGGTCTAATATTCCACAATCACATCAATCGGCATCCGGCGGTACAATGCCACGCCGTACGTCTGCTGGGTGGGGCCCAAGTCGANCTTGGCGATNATACGTTCACCACAGGCATCTGATGCGAACGATCAAACCGGCTGACAACGTTCAGTTCCGGCCCNGCGGAGGTCTTCCACTTTCCTAGGTGGGGAGCGAAAAATTGGGGTTAACCCNGGGTGGGGTNCGGGCAAANTAGGGCAACCCNGCNCAATTCNGGGGAATTGGACAAAAGCTAAGTTGCNAGCGCGAGTCTTAAACAGTCACNCGGGTGAGTTTGGGCATTTNGTCACA]
consensusID : consensus_2495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[TTATAACGGGGTGGGTGGTGGAAGTAGCTCTAACCGAAACAGTATACACAGCTCTGTGCCGGATCTTAGCCGGTCCATGCCCAATACGCCCAACTCCGGGCACAAACTGTCCCTCGCATCGTCATACGATTCCGTGCTGGAAGAGAATGAGGGTGAAAATCAACCGCCTACAATGGTTACCGGCCGTGGTGGTGATGATGCTAGAGGTTATGGTAATAATCAGTACCAATCCGCTATCAAGTACATCCACACCAATGATCCAGTTGTTGCTAACAATGTGCACGTGAGGCGCAAATCGGA]
[+] EMBL AL930677 [TTATAACGGGGTGGGTGGTGGAAGTAGCTCTAACCGAAACAGTATACACAGCTCTGTGCCGGATCTTAGCCGGTCCATGCCCAATACGCCCAACTCCGGGCACAAACTGTCCCTCGCATCGTCATACGATTCCGTGCTGGAAGAGAATGAGGGTGAAAATCAACCGCCTACAATGGTTACCGGCCGTGGTGGTGATGATGCTAGAGGTTATGGTAATAATCAGTACCAATCCGCTATCAAGTACATCCACACCAATGATCCAGTTGTTGCTAACAATGTGCACGTGAGGCGCAAATCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2495#0 ------------------------------------------------------------
consensus_2495#1 TTATAACGGGGTGGGTGGTGGAAGTAGCTCTAACCGAAACAGTATACACAGCTCTGTGCC 60
consensus_2495#0 --------GGCAGAATCCGCACGANGN----AACTCCGGGCACAAACTGTCCCTCGCATC 48
consensus_2495#1 GGATCTTAGCCGGTCCATGCCCAATACGCCCAACTCCGGGCACAAACTGTCCCTCGCATC 120
* * * ** * * *****************************
consensus_2495#0 GTCATACGATTCCGTGCTGGAAGAGAATGAGGGTGAAAATCAACCGCCTACAATGGTTAC 108
consensus_2495#1 GTCATACGATTCCGTGCTGGAAGAGAATGAGGGTGAAAATCAACCGCCTACAATGGTTAC 180
************************************************************
consensus_2495#0 CGGCCGTGGTGGTGATGATGCTAGAGGTTATGGTAATAATCAGTACCAATCCGCTATCAA 168
consensus_2495#1 CGGCCGTGGTGGTGATGATGCTAGAGGTTATGGTAATAATCAGTACCAATCCGCTATCAA 240
************************************************************
consensus_2495#0 GTACATCCACACCAATGATCCAGTTGTTGCTAACAATGTGCACGTGAGGCGCAAATCGGA 228
consensus_2495#1 GTACATCCACACCAATGATCCAGTTGTTGCTAACAATGTGCACGTGAGGCGCAAATCGGA 300
************************************************************
consensus_2495#0 AGATATGCTTTCGGGCAAATCACGATCAACACGCATACCGATCAAATCGTTCCTCTTCTC 288
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 GAACACACCGGTCCGGTCAGGCCGGAATGAGTACGGCAGCTCATCATCATCCGCTTACTA 348
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 CGGTGGCGGGGGTGGTGAATATGGTGTATCCCGTGGGACTCCATCTGGCGGACCGTTGTC 408
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 GTACTATTCCGACTCGAAGGACCGTGTCGTATCGATCCGTGTGAACAATCAGGCGACTAA 468
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 GTCGCAAACCGGCAAACATGTTCGATGGTATCACTAATCGGTCTAATATTCCACAATCAC 528
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 ATCAATCGGCATCCGGCGGTACAATGCCACGCCGTACGTCTGCTGGGTGGGGCCCAAGTC 588
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 GANCTTGGCGATNATACGTTCACCACAGGCATCTGATGCGAACGATCAAACCGGCTGACA 648
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 ACGTTCAGTTCCGGCCCNGCGGAGGTCTTCCACTTTCCTAGGTGGGGAGCGAAAAATTGG 708
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 GGTTAACCCNGGGTGGGGTNCGGGCAAANTAGGGCAACCCNGCNCAATTCNGGGGAATTG 768
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 GACAAAAGCTAAGTTGCNAGCGCGAGTCTTAAACAGTCACNCGGGTGAGTTTGGGCATTT 828
consensus_2495#1 ------------------------------------------------------------
consensus_2495#0 NGTCACA 835
consensus_2495#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||