These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [GCAAGAATCGCCCCGAGGTTAATTATGAAACATGTGAGTGAAACGTGAGTGTGTGTTTTGTCCAAAATTTTACAATTAGACTGAAGAAAAAAGAAGCTAACCAAAATAAGAACTGAATACGAATGCAGAAGCAGCAACAGCAGCAGCAGAGTACAACTTTAGCTGAATAATGAGCTGAGCATCCAGGGGTAATAAAGCATGTGCCAATAAAATAAGAATTGAAAAATAAAAGGTACGAGATAGCTCTCCCCTTTCCCCCCTCCTCCCAATCCCACCAAGACTCCCCCACAGTCAGCTGGTGNGAAACGAATTTGCGACAAGTTTTAGTTGGTTAGTAACTGGTGAATTGTGCAATGGTGAAGCAAATTTGTAACATTGACACTAACACTCTTGTTCNGGTATTTTCTCTGATCCATTAACCTACTCAAGAGCAAAGCAACAACTGATGTAACATTTTCCATCGATTTTACAGTGAAACAAACAANACACTCATCTCTATTTCCTCTCAGCGCCAANCCGAAAGCGATACAANTATAAGTNCAAACACATCAACATACGAACCTCTCTAACAANAACAAAACAAAACTGGTCGCACACAACAGTGAACAAAGCNACACACGCACATACCTCACTACACACTCAACGTGTAAAGCAAACACTTACTTCGTGTAACACACACACACAAGCTCTAACTCATGATNAACANGCTGTCATACAGCAACCAAACTACGGTACACACTGTCACAAACGGTATTCATCTATTCGCAGTCATTCCTCCATTTCCGCGACGGCAACCTTTNACACCGNTCAGTTCACACACA] [+] EMBL AL930763 [GCAAGAATCGCCCCGAGGTTAATTATGAAACATGTGAGTGAAACGTGAGTGTGTGTTTTGTCCAAAATTTTACAATTAGACTGAAGAAAAAAGAAGCTAACCAAAATAAGAACTGAATACGAATGCAGAAGCAGCAACAGCAGCAGCAGAGTACAACTTTAGCTGAATAATGAGCTGAGCATCCAGGGGTAATAAAGCATGTGCCAATAAAATAAGAATTGAAAAATAAAAGGTACGAGATAGCTCTCCCCTTTCCCCCCTCCTCCCAATCCCACCAAGACTCCCCCACAGTCAGCTGGTGNGAAACGAATTTGCGACAAGTTTTAGTTGGTTAGTAACTGGTGAATTGTGCAATGGTGAAGCAAATTTGTAACATTGACACTAACACTCTTGTTCNGGTATTTTCTCTGATCCATTAACCTACTCAAGAGCAAAGCAACAACTGATGTAACATTTTCCATCGATTTTACAGTGAAACAAACAANACACTCATCTCTATTTCCTCTCAGCGCCAANCCGAAAGCGATACAANTATAAGTNCAAACACATCAACATACGAACCTCTCTAACAANAACAAAACAAAACTGGTCGCACACAACAGTGAACAAAGCNACACACGCACATACCTCACTACACACTCAACGTGTAAAGCAAACACTTACTTCGTGTAACACACACACACAAGCTCTAACTCATGATNAACANGCTGTCATACAGCAACCAAACTACGGTACACACTGTCACAAACGGTATTCATCTATTCGCAGTCATTCCTCCATTTCCGCGACGGCAACCTTTNACACCGNTCAGTTCACACACA] consensusID : consensus_2500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [GCAAGAATCGCCCGAGGGTACGGTGAATGTGCATGGTGAAGCAAATTGTAAATGACACTAAATTGTTGGTATTTTTGNTCCNTTAAACTCTCCAAGAGCAAAGCCAAAATGATGTTACATTTTCCATCGATTTTACAGTGAAACAAAAAAACACTCATCTCTATTTCCTCTCAGGGCCCAAAAGAAAGCGNATAAAATATNACGTTAAACACCNGGAAATTAGAACCTCTCTTAAAAAAACCAACACACAAAAATGGTCGCCACACAACAGTGTAACAAAGAAACAGAATAACTATTCACATAAACGTGTATACAGAAACCACTTACTTCGCTGTAACACACACACACCAAGGCTTTTAATCACTGGATAAAGGCTCGTATTAAAGCAACC] [+] EMBL AL931072 [GCAAGAATCGCCCGAGGGTACGGTGAATGTGCATGGTGAAGCAAATTGTAAATGACACTAAATTGTTGGTATTTTTGNTCCNTTAAACTCTCCAAGAGCAAAGCCAAAATGATGTTACATTTTCCATCGATTTTACAGTGAAACAAAAAAACACTCATCTCTATTTCCTCTCAGGGCCCAAAAGAAAGCGNATAAAATATNACGTTAAACACCNGGAAATTAGAACCTCTCTTAAAAAAACCAACACACAAAAATGGTCGCCACACAACAGTGTAACAAAGAAACAGAATAACTATTCACATAAACGTGTATACAGAAACCACTTACTTCGCTGTAACACACACACACCAAGGCTTTTAATCACTGGATAAAGGCTCGTATTAAAGCAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2500#0 GCAAGAATCGCCCCGAGGTTAATTATGAAACATGTGAGTGAAACGTGAGTGTGTGTTTTG 60 consensus_2500#1 ------------------------------------------------------------ consensus_2500#0 TCCAAAATTTTACAATTAGACTGAAGAAAAAAGAAGCTAACCAAAATAAGAACTGAATAC 120 consensus_2500#1 ------------------------------------------------------------ consensus_2500#0 GAATGCAGAAGCAGCAACAGCAGCAGCAGAGTACAACTTTAGCTGAATAATGAGCTGAGC 180 consensus_2500#1 ------------------------------------------------------------ consensus_2500#0 ATCCAGGGGTAATAAAGCATGTGCCAATAAAATAAGAATTGAAAAATAAAAGGTACGAGA 240 consensus_2500#1 ------------------------------------------------------------ consensus_2500#0 TAGCTCTCCCCTTTCCCCCCTCCTCCCAATCCCACCAAGACTCCCCCACAGTCAGCTGGT 300 consensus_2500#1 ------------------------------------------------------------ consensus_2500#0 GNGAAACGAATTTGCGACAAGTTTTAGTTGGTTAGTAACTGGTGAATTGTGCAATGGTGA 360 consensus_2500#1 ----------------GCAAGAATCGCCCG---AGGGTACGGTGAAT-GTGCA-TGGTGA 39 **** * * ** ******* ***** ****** consensus_2500#0 AGCAAATTTGTAACATTGACACTAACACTCTTGTTCNGGTATTTTCTCTGATCCATTAAC 420 consensus_2500#1 AGCAAATT-GTAAA--TGACACTAAA----TTGTT--GGTATTTT---TGNTCCNTTAAA 87 ******** **** ********* ***** ******** ** *** **** consensus_2500#0 CTACTCAAGAGCAAAGCAACAACTGATGTAACATTTTCCATCGATTTTACAGTGAAACAA 480 consensus_2500#1 CTCTCCAAGAGCAAAGCCA-AAATGATGTTACATTTTCCATCGATTTTACAGTGAAACAA 146 ** ************ * ** ****** ****************************** consensus_2500#0 ACAANACACTCATCTCTATTTCCTCTCAGCGCCAANCCGAAAGCGATACAANTATAAGTN 540 consensus_2500#1 A-AAAACACTCATCTCTATTTCCTCTCAGGGCCCAAAAGAAAGCGNATAAAATATNACGT 205 * ** ************************ *** * ******* ** *** * consensus_2500#0 CAAACACATCAACATACGAACCTCTCTAACAANAACAAA---ACAAAACTGGTCGC-ACA 596 consensus_2500#1 TAAACACCNGGAAATTAGAACCTCTCTTAAAAAAACCAACACACAAAAATGGTCGCCACA 265 ****** * ** ********** * ** *** ** ****** ******* *** consensus_2500#0 CAACAGTG-AACAAAGCNACACACGCACATACCTCACTACACACTCAACGTGTAAAGCAA 655 consensus_2500#1 CAACAGTGTAACAAAGAAACAGA-----ATAACTATTCACATAAACG-TGTATACAGAAA 319 ******** ******* *** * *** ** *** * * ** ** ** ** consensus_2500#0 ACACTTACTTCG-TGTAACACACACACAC--AAGCTCTAACTCATGATNAACANGCT-GT 711 consensus_2500#1 CCACTTACTTCGCTGTAACACACACACACCAAGGCTTTTAATCACTGGATAAAGGCTCGT 379 *********** **************** * *** * * *** * * *** ** consensus_2500#0 CATACAGCAACCAAACTACGGTACACACTGTCACAAACGGTATTCATCTATTCGCAGTCA 771 consensus_2500#1 ATTAAAGCAACC------------------------------------------------ 391 ** ******* consensus_2500#0 TTCCTCCATTTCCGCGACGGCAACCTTTNACACCGNTCAGTTCACACACA 821 consensus_2500#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||