These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence [CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTACACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTTACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTTTCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATTATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAGGCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTCCGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACACAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANAGAAAGCCAAGGGGACCAACACAACTTACATACGANACAACCGGTTTACACACGAGACAGCAGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGCTACACAAATCAAACTCGAAACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGAACTACGATCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGTATATTTATAACCTATACCCTAGGTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACNCGACAAAAGCCTGGCGGTTGGGNCAAACCCCACACCCCGAACTTTTTTTGGGCAAACACATCGGNNGGNGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTTCCGGGACGACACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCNTTCCCCTTNCTACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTATCTGTTNCTAATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACTTATGGGAGTCGCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACGCAAATTANAGTGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACCTTATACAACCATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATCCGGGACGAATGAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGACAACCTATGGCGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG] [+] EMBL AL930770 [CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTACACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTTACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTTTCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATTATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAGGCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTCCGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACACAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANAGAAAGCCAAGGGGACCAACACAACTTACATACGANACAACCGGTTTACACACGAGACAGCAGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGCTACACAAATCAAACTCGAAACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGAACTACGATCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGTATATTTATAACCTATACCCTAGGTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACNCGACAAAAGCCTGGCGGTTGGGNCAAACCCCACACCCCGAACTTTTTTTGGGCAAACACATCGGNNGGNGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTTCCGGGACGACACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCNTTCCCCTTNCTACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTATCTGTTNCTAATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACTTATGGGAGTCGCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACGCAAATTANAGTGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACCTTATACAACCATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATCCGGGACGAATGAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGACAACCTATGGCGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG] consensusID : consensus_2501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAAGAAAGAAAAAGCTAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCATAGCTGGAAGATGGTTATTCTCTAAGCCACTTCTCCTGTCGATCTGTCGATCAGCTCATTGTTTATTCAGTGTGTATCTGTGTGTATCTGTGAGTGTAATCTTCCCCTCCCGCACTGTGCAACAACAAATGGTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTCTCCTTCACTGCTC] [+] EMBL BX614389 [AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAAGAAAGAAAAAGCTAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCATAGCTGGAAGATGGTTATTCTCTAAGCCACTTCTCCTGTCGATCTGTCGATCAGCTCATTGTTTATTCAGTGTGTATCTGTGTGTATCTGTGAGTGTAATCTTCCCCTCCCGCACTGTGCAACAACAAATGGTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTCTCCTTCACTGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2501#0 CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTC 60 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 AAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATG 120 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 GCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTA 180 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 CACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTT 240 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 ACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTT 300 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 TCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATT 360 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 ATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAG 420 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 GCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTC 480 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 CGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACA 540 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 CAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANA 600 consensus_2501#1 ----AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAA--GAAAGA 54 * * *** ** * * * * * ** ** * * * ** * consensus_2501#0 GAAAGCCAAGGGGA---CCAACACAACTTACATAC-GANACAACCGGTTTACACACGAGA 656 consensus_2501#1 AAAAGCTAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCAT-AGC 113 ***** ** * * * * ******** * ** ** * * * ** ** consensus_2501#0 CAGCAGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGC 716 consensus_2501#1 TGGAAGATGGTTATTCTCTAAGCCACTTCTCCTGTCGAT-CTGTCGATCAGCTCATTGTT 172 * **** ** * * * * ** * * * * ** * * consensus_2501#0 TACACAAATCAAACTCGAA---ACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGA 773 consensus_2501#1 TATTCAGTGTGTATCTGTGTGTATCTGTGAGTGTAATCTT--CCCCTCCCGCACTGTGCA 230 ** ** * * * *** **** * * ** * * ** * consensus_2501#0 ACTACGATCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGT-ATATTTATAACCTA 832 consensus_2501#1 ACAACAAATGGTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGA 290 ** ** * * * * *** * * ** ** * ** * * ** * consensus_2501#0 TACCCTAGGTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACN 892 consensus_2501#1 TAGTATACA---TGGTCGT--GAAATATTTCAACTGCTCTTTA-CTTCAAGATGGCGGCA 344 ** ** *** * **** * **** * ** * * * ** * * * consensus_2501#0 CGACAAAAGCCTGGCGGTTGGGNCAAACCCCACACCCCGA--ACTTTTTTTGGGCAAACA 950 consensus_2501#1 AACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTA 404 ***** * ** *** * * * * * **** **** * consensus_2501#0 CATCGGNNGGNGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTT 1010 consensus_2501#1 CTTCTAAGTACGTGTGCTCTCCTTCACTGCTC---------------------------- 436 * ** * * * * ** * consensus_2501#0 CCGGGACGACACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCN 1070 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 TTCCCCTTNCTACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTA 1130 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 TCTGTTNCTAATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACT 1190 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 TATGGGAGTCGCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACG 1250 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 CAAATTANAGTGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACC 1310 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 TTATACAACCATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATC 1370 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 CGGGACGAATGAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGA 1430 consensus_2501#1 ------------------------------------------------------------ consensus_2501#0 CAACCTATGGCGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG 1482 consensus_2501#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||