cluster # 2502

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Anopheles gambiae
cluster # 2502 cluster # 2502 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2502#0 length = 713 sequences # 1

consensus_2502#1 length = 595 sequences # 1

consensusID : consensus_2502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGAGGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATGTTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTTTCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTAGACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAGCCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTACCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATACTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACGGGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCTTACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACACATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAACAACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA]

[+] EMBL AL930798             [GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGAGGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATGTTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTTTCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTAGACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAGCCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTACCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATACTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACGGGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCTTACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACACATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAACAACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA]




>consensus_2502#0
GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGA
GGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATG
TTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTT
TCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTA
GACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAG
CCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTA
CCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATA
CTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACG
GGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCT
TACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACAC
ATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAAC
AACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA

consensusID : consensus_2502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTGTGAATCCATCTTACAGATAAAAGATTTCAGATTTTAGAGATTTTCAAATTTTGAGGGACAAAAATAGATTGAAAACAAAGGGACTGTCAAAATTTTTATTTAATTTCGATATATTTGGATAATTGATTGATAATTGATAACTTGGAAATGTTGCACGATTAGGAGGAGTTTACTGTAAGCAAGATTAAACCGATCGCTTTGATAGATTAGACGCATGTATAACGTCCTATCAGCTCCAGAAGAAATGTTATCTTTATCTTAGAACCTTTTTTCGTCACAATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGAGGATTATNNGTTGTAAACATGTATGTAAAGCTTTGATACTCTTCTTGCGTCCTCAGTCTATCTATTGTTGAANAATGCAGCTAGTACGAGGATTACTTTAGCTCGAGATTCCCCTGGCATTTCATNGTACCGTTCGGCCTCTTGAACGAGAAAGATGTGTCTAATTTACCATCTTCACTGACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAGACGATTACGGGAA]

[+] EMBL AL934549             [CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTGTGAATCCATCTTACAGATAAAAGATTTCAGATTTTAGAGATTTTCAAATTTTGAGGGACAAAAATAGATTGAAAACAAAGGGACTGTCAAAATTTTTATTTAATTTCGATATATTTGGATAATTGATTGATAATTGATAACTTGGAAATGTTGCACGATTAGGAGGAGTTTACTGTAAGCAAGATTAAACCGATCGCTTTGATAGATTAGACGCATGTATAACGTCCTATCAGCTCCAGAAGAAATGTTATCTTTATCTTAGAACCTTTTTTCGTCACAATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGAGGATTATNNGTTGTAAACATGTATGTAAAGCTTTGATACTCTTCTTGCGTCCTCAGTCTATCTATTGTTGAANAATGCAGCTAGTACGAGGATTACTTTAGCTCGAGATTCCCCTGGCATTTCATNGTACCGTTCGGCCTCTTGAACGAGAAAGATGTGTCTAATTTACCATCTTCACTGACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAGACGATTACGGGAA]




>consensus_2502#1
CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTGTGAATCCATCTTACAGATAAA
AGATTTCAGATTTTAGAGATTTTCAAATTTTGAGGGACAAAAATAGATTGAAAACAAAGG
GACTGTCAAAATTTTTATTTAATTTCGATATATTTGGATAATTGATTGATAATTGATAAC
TTGGAAATGTTGCACGATTAGGAGGAGTTTACTGTAAGCAAGATTAAACCGATCGCTTTG
ATAGATTAGACGCATGTATAACGTCCTATCAGCTCCAGAAGAAATGTTATCTTTATCTTA
GAACCTTTTTTCGTCACAATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGA
GGATTATNNGTTGTAAACATGTATGTAAAGCTTTGATACTCTTCTTGCGTCCTCAGTCTA
TCTATTGTTGAANAATGCAGCTAGTACGAGGATTACTTTAGCTCGAGATTCCCCTGGCAT
TTCATNGTACCGTTCGGCCTCTTGAACGAGAAAGATGTGTCTAATTTACCATCTTCACTG
ACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAGACGATTACGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2502#0      GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGA 60
consensus_2502#1      ---------------------CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTG 39
                                             ** **  ** **   ***    ** ***  *      

consensus_2502#0      GGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATG 120
consensus_2502#1      TGAATCCATCTTACAG-ATA---AAAGATTTCAGATTTTAGAGATTTTCAAATTTTGAGG 95
                       ** *   *  ** *   **   **** *** * * * *       ** *  * *  * *

consensus_2502#0      TTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTT 180
consensus_2502#1      GACAAAAATAGATTGAAAACAAAGGGACT--GTCAAAATTTTTATTTAATTTCGATATAT 153
                          ****  ** *   *  *     ***  ** * * *        * ****  * * *

consensus_2502#0      TCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTA 240
consensus_2502#1      T-----TGGATAATTGATTGATAAT----TGATAACTTGGAAATGTTGCACGATTAGGAG 204
                      *     * *    ****  **  *     **   * **    ** **    **  * *  

consensus_2502#0      GACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAG 300
consensus_2502#1      GAGTTTACTGTAAGCAAGATTAAACCGATCGC-TTTGATA-GATTAGACGCATGTATAAC 262
                      ** ** *** * * ***  ** *     * ** * * * * *****  **  *  **** 

consensus_2502#0      CCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTA 360
consensus_2502#1      GTCCTATCAGC-TCCAGAAGAAATGTT----ATC-TTTATCTTAGAACCTTTTTTCGTCA 316
                         ****  ** *  *  ***  * *     ***   ** * ** *  *  *    *  *

consensus_2502#0      CCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATA 420
consensus_2502#1      C---AATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGAGGATTA-TNNGTT 372
                      *    *  **    **      ** **    *  **  **    ** ** **      * 

consensus_2502#0      CTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACG 480
consensus_2502#1      GTAAACATGTATGTAAAGCTT-------TGATACT---------CTTCTTGCGTCCT-CA 415
                       ******   *   * *** *        ** *           ** *****  *   * 

consensus_2502#0      GGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCT 540
consensus_2502#1      GTCTATCTATTGTTGAANAATGCA-GCTAGTACGAGG---ATTACTTTAGCTCGAGATTC 471
                      * * *   **     ** ****** **** **         *******    *    *  

consensus_2502#0      TACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACAC 600
consensus_2502#1      CCCTGGCATTT--CATNGTACCGTTCGGCC-TCTTGAACGAGAAAGATGTGTCTA----- 523
                        ***  ** *    *  ** *  *   ** ** *   *      **   **  *     

consensus_2502#0      ATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAAC 660
consensus_2502#1      ATTTACCATCTTCACTGACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAG- 582
                      ****  ***    **  *   **  * *   ***    ***  *    *    **  *  

consensus_2502#0      AACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA 713
consensus_2502#1      -ACGATTACGGGAA--------------------------------------- 595
                       **  * **    *