These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGAGGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATGTTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTTTCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTAGACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAGCCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTACCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATACTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACGGGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCTTACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACACATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAACAACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA] [+] EMBL AL930798 [GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGAGGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATGTTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTTTCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTAGACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAGCCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTACCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATACTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACGGGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCTTACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACACATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAACAACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA] consensusID : consensus_2502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTGTGAATCCATCTTACAGATAAAAGATTTCAGATTTTAGAGATTTTCAAATTTTGAGGGACAAAAATAGATTGAAAACAAAGGGACTGTCAAAATTTTTATTTAATTTCGATATATTTGGATAATTGATTGATAATTGATAACTTGGAAATGTTGCACGATTAGGAGGAGTTTACTGTAAGCAAGATTAAACCGATCGCTTTGATAGATTAGACGCATGTATAACGTCCTATCAGCTCCAGAAGAAATGTTATCTTTATCTTAGAACCTTTTTTCGTCACAATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGAGGATTATNNGTTGTAAACATGTATGTAAAGCTTTGATACTCTTCTTGCGTCCTCAGTCTATCTATTGTTGAANAATGCAGCTAGTACGAGGATTACTTTAGCTCGAGATTCCCCTGGCATTTCATNGTACCGTTCGGCCTCTTGAACGAGAAAGATGTGTCTAATTTACCATCTTCACTGACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAGACGATTACGGGAA] [+] EMBL AL934549 [CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTGTGAATCCATCTTACAGATAAAAGATTTCAGATTTTAGAGATTTTCAAATTTTGAGGGACAAAAATAGATTGAAAACAAAGGGACTGTCAAAATTTTTATTTAATTTCGATATATTTGGATAATTGATTGATAATTGATAACTTGGAAATGTTGCACGATTAGGAGGAGTTTACTGTAAGCAAGATTAAACCGATCGCTTTGATAGATTAGACGCATGTATAACGTCCTATCAGCTCCAGAAGAAATGTTATCTTTATCTTAGAACCTTTTTTCGTCACAATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGAGGATTATNNGTTGTAAACATGTATGTAAAGCTTTGATACTCTTCTTGCGTCCTCAGTCTATCTATTGTTGAANAATGCAGCTAGTACGAGGATTACTTTAGCTCGAGATTCCCCTGGCATTTCATNGTACCGTTCGGCCTCTTGAACGAGAAAGATGTGTCTAATTTACCATCTTCACTGACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAGACGATTACGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2502#0 GAATCCCCCGAGGTNTCACAATGGATGGAGATTTTNNAAGAAAGCATCTTANCAACGCGA 60 consensus_2502#1 ---------------------CCGAGGGTAATATTTGCAGAGGAAATATTAAAAGTATTG 39 ** ** ** ** *** ** *** * consensus_2502#0 GGATTATGTTGTAAAATGTATGTAAAGCTTTGATACTCTTCTTGCGTTTAGTTATCTATG 120 consensus_2502#1 TGAATCCATCTTACAG-ATA---AAAGATTTCAGATTTTAGAGATTTTCAAATTTTGAGG 95 ** * * ** * ** **** *** * * * * ** * * * * * consensus_2502#0 TTTGAAAAATGAGTAGTACGAGGATTACTTTGTGAGATTCCCCTGGCATTTTCATTGTTT 180 consensus_2502#1 GACAAAAATAGATTGAAAACAAAGGGACT--GTCAAAATTTTTATTTAATTTCGATATAT 153 **** ** * * * *** ** * * * * **** * * * consensus_2502#0 TCTTGTTCGGCTCTTGAACGAGGAAGATGTGTCTAATTTACCATCTTCACTGACGATGTA 240 consensus_2502#1 T-----TGGATAATTGATTGATAAT----TGATAACTTGGAAATGTTGCACGATTAGGAG 204 * * * **** ** * ** * ** ** ** ** * * consensus_2502#0 GACTTCACTTTTAACAATCTTGATTTATTTGCGTATAAGACGATTACGCGATTAGATAAG 300 consensus_2502#1 GAGTTTACTGTAAGCAAGATTAAACCGATCGC-TTTGATA-GATTAGACGCATGTATAAC 262 ** ** *** * * *** ** * * ** * * * * ***** ** * **** consensus_2502#0 CCTCTATGGGCATTTACTAGACTTATCTTGCATCGCGTACCGTATAGTCAATCCATGCTA 360 consensus_2502#1 GTCCTATCAGC-TCCAGAAGAAATGTT----ATC-TTTATCTTAGAACCTTTTTTCGTCA 316 **** ** * * *** * * *** ** * ** * * * * * consensus_2502#0 CCGAGACTGGTCCGGATGGGAGTTGCACCGGAATTCACAAGGACCGGGGGTTGCNAAATA 420 consensus_2502#1 C---AATNGGNTGCGAGATTTCTTACAGAAAACATCTTAAAACGCGAGGATTA-TNNGTT 372 * * ** ** ** ** * ** ** ** ** ** * consensus_2502#0 CTAAACAAACACAAACAGCCTATAAAAGCGACAACAAAACACAACTACTTGCAACAAACG 480 consensus_2502#1 GTAAACATGTATGTAAAGCTT-------TGATACT---------CTTCTTGCGTCCT-CA 415 ****** * * *** * ** * ** ***** * * consensus_2502#0 GGCAACACATCAAACAATAATGCATGCTAATATATACTACCTTACTTTCTACCATCTTCT 540 consensus_2502#1 GTCTATCTATTGTTGAANAATGCA-GCTAGTACGAGG---ATTACTTTAGCTCGAGATTC 471 * * * ** ** ****** **** ** ******* * * consensus_2502#0 TACTGNTATATACTCTGCTATCTCTATCCCATCCTANCCCGNTCGGACACGTTCATACAC 600 consensus_2502#1 CCCTGGCATTT--CATNGTACCGTTCGGCC-TCTTGAACGAGAAAGATGTGTCTA----- 523 *** ** * * ** * * ** ** * * ** ** * consensus_2502#0 ATTTTTCATACCAACACAAAAACACAAAAACCACCCACAACCGTACAAACATGCAAAAAC 660 consensus_2502#1 ATTTACCATCTTCACTGACGCACGTAGACTTCACTTTTAACAATGTGGATTCTCATGAG- 582 **** *** ** * ** * * *** *** * * ** * consensus_2502#0 AACATTCACATTTATAAAACAAAAAGTTCATCACCGAACAACAACATACTCGA 713 consensus_2502#1 -ACGATTACGGGAA--------------------------------------- 595 ** * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||