cluster # 2509

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Anopheles gambiae
cluster # 2509 cluster # 2509 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2509#0 length = 644 sequences # 1

consensus_2509#1 length = 312 sequences # 1

consensusID : consensus_2509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGCGCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGCTGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAGTGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCTGCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCGATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGCAGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAACGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA]

[+] EMBL BM583387             [CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGCGCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGCTGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAGTGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCTGCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCGATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGCAGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAACGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA]




>consensus_2509#0
CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGC
GCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGC
TGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAG
TGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCT
GCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCG
ATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGC
AGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAA
CGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGG
GAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAG
TGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTT
GTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA

consensusID : consensus_2509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [CGAGGTTAATAACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAATGTTTGCGTCTTTTAGGTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAGTGGCCGCATGTGTGTGTGCGAGTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAACCTAAGAGCTCCC]

[+] EMBL AL930909             [CGAGGTTAATAACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAATGTTTGCGTCTTTTAGGTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAGTGGCCGCATGTGTGTGTGCGAGTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAACCTAAGAGCTCCC]




>consensus_2509#1
CGAGGTTAATAACACGGGAGGGAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCG
CCCACAGCCGACAGGCTCTAGTGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTG
GAACTGATGCTTCCTCTTGTTGTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTC
GTGAATGTTTGCGTCTTTTAGGTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAG
TGGCCGCATGTGTGTGTGCGAGTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAAC
CTAAGAGCTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2509#0      CCGGCAAAAGCTTCGACTGGTACATGAAAAACGTGTACCCGGAGAAGTTCATCCCGACGC 60
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      GCAATGTGCGCGCATTCGGACGGTTGGCCTCCCAGGCGGACAATCTCTGCCTCGACACGC 120
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      TGCAGCAGAATGCGGACAAACCGTGGAACCTTGGTATCTACACCTGCTTCAAGCCGGAAG 180
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      TGTCCGCATCGCAACTGTTTTCGCTAACGAAACGCAACGTGCTGCGGAACGAGCGCAGCT 240
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      GCGCGACGGTGCAGGCAAGCAAGTCGGAATCGAAGTTCGTCGTGATGATACCGTGCATCG 300
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      ATGATGAAGATATCGACGATACGTGGGAGTTTACCGAGAATCGGCAGCTGCGCCACAAGC 360
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      AGTCGGGCCTGTGCCTGGACAGTAGCGACCTTTCGACGAAAAGCTACGTGCACGTGGCAA 420
consensus_2509#1      ------------------------------------------------------------
                                                                                  

consensus_2509#0      CGTGTCATCCGGGAATTAAAACACAAAAGTGGGAATTTCAACACGAGTAGACACGGGAGG 480
consensus_2509#1      --------------------------------------CGAGGTTAATA-ACACGGGAGG 21
                                                            * *    * ** **********

consensus_2509#0      GAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAG 540
consensus_2509#1      GAGGGGATCGGTAGAGCGATTCGTATTGTTTTATTTGCGCCCACAGCCGACAGGCTCTAG 81
                      ************************************************************

consensus_2509#0      TGTATGTGTGTGTTTGTGGGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTT 600
consensus_2509#1      TGTATGTGTGTGTTTGTGTGTGTGTGGAAGGGAAAGCTGGAACTGATGCTTCCTCTTGTT 141
                      ****************** *****************************************

consensus_2509#0      GTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAA---------------- 644
consensus_2509#1      GTGAGTGGTTTGGCAGCATGATTCAAGTATGACTCTTTCGTGAATGTTTGCGTCTTTTAG 201
                      ********************************************                

consensus_2509#0      ------------------------------------------------------------
consensus_2509#1      GTATGCAATAATGGCCAGAGAAATCAGGAATCTGTTTAGTGGCCGCATGTGTGTGTGCGA 261
                                                                                  

consensus_2509#0      ---------------------------------------------------
consensus_2509#1      GTGTGTGTATGACGTGTATTNGTTATCTGTGTACGCAACCTAAGAGCTCCC 312