These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGCCCACGCGTCCGATCTATCACTTTTCACATGTTTCCATTATCTTTTCTTTATTTGTTTTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGGACGAATCGCTTGACGATTTGCTGGACGATGAAAGTGGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTCCTCGCTGCCCGAAAAGCACTTCCTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTTCGCGACTGCTGACCCACACCCATCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTGCTCGCGCTGGCAGATACAGTATCTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGATCGATGCTGCCAAAACGGCGATCGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGGACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAACATTACAAC] [+] EMBL BM594385 [CCGCCCACGCGTCCGATCTATCACTTTTCACATGTTTCCATTATCTTTTCTTTATTTGTTTTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGGACGAATCGCTTGACGATTTGCTGGACGATGAAAGTGGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTCCTCGCTGCCCGAAAAGCACTTCCTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTTCGCGACTGCTGACCCACACCCATCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTGCTCGCGCTGGCAGATACAGTATCTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGATCGATGCTGCCAAAACGGCGATCGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGGACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAACATTACAAC] consensusID : consensus_2527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTGGGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGGATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATTTTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGATTTCACAGCGCCATTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCATTCCACTCGGAGAGCGAGGAAGAGCTGCTGAATCTAATCCCCATCGTACGTGAAAGGGCAACCGAAGTGGCACGTGCTGAAGGA] [+] EMBL BM613617 [CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTGGGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGGATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCTTTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACAGATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTTGTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGAAGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGACCGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATTTTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGATTTCACAGCGCCATTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCATTCCACTCGGAGAGCGAGGAAGAGCTGCTGAATCTAATCCCCATCGTACGTGAAAGGGCAACCGAAGTGGCACGTGCTGAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2527#0 ------------------------------------------------------------ consensus_2527#1 CCGGCCACAGTACCATCCGAAACAGTTGATGGAGCTGCTGAACTCGGGCAAAATACGTTG 60 consensus_2527#0 --------------CCGCCCA-CGCGTCCGATCTATCA-CTTTTCACATGTTTCCATTAT 44 consensus_2527#1 GGTTAAAGCGATCCTAGCCCATCTTGTTCGTTGCATCAGCGGTTCCTATACGGTGCGCGG 120 ***** * ** ** * **** * *** ** consensus_2527#0 CTTTTCTTTATTTGTTTTATATGTGTGTTTCCAGCGTGGTTGGTCTAGAACTCGCACTCT 104 consensus_2527#1 ATGCGGAGGAGACGAGGAAAGTCTCAACCGACAGCGTGGTTGGTCTAGAACTCGCACTCT 180 * * * * * * ***************************** consensus_2527#0 TTCCATTAGCTGCCCGGCAGGCACCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACA 164 consensus_2527#1 TTCCATTAGCTGCCCGGCAGGCGCCGTTAGTCCTCTTGAACCAAGAGGATCGACGACACA 240 ********************** ************************************* consensus_2527#0 GATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTT 224 consensus_2527#1 GATTCCAGAGGAGCTAACGCTAGACTATGCGGAAATTACATCCATTCCTCCATTGCCCTT 300 ************************************************************ consensus_2527#0 GTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGA 284 consensus_2527#1 GTGGACTCTGCTGGCAGCAGACAAAGAATCGACCAGTAGCAATTTGCAGCAAAATGACGA 360 ************************************************************ consensus_2527#0 AGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCG-----GACGAATCGCTTGAC 339 consensus_2527#1 AGTGAAGGATTACAATGAACTGTTCGAAAGCAACACGGCGATCGCGAAGGAAAATTTGAC 420 **************************************** ** * * ***** consensus_2527#0 -GATTTGCTGGACGATGAAAGTGGCGGTGGTGAGACGAATCGCCACATGGATCGACGTTC 398 consensus_2527#1 CGGCGTACCGAACACGGAAAACATTTCGACCGATTCGCTGGACGACTGCGGGCTTCGATT 480 * * * * ** **** ** ** * ** * * ** * consensus_2527#0 CTCGCTGCCCGAAAAGCACTTCCTTTTCCCATTTCGGTCCCCGCCAAGGGCAGCTGCTTT 458 consensus_2527#1 TTTGCTAGCAATGAAACATTACAACTATTTGCTGCGATGTTTGCCGA-------TTTCAC 533 * *** * ** ** * * * * ** * *** * * consensus_2527#0 CGCGACTGCTGACCCACACCCATCTTGCCCGGACTGTCGTCGCTCGATCAGATGCATCTG 518 consensus_2527#1 AGCGCCATTCGTTCCAGAAGCAGGGCGTCGGGACGTCCAACATCGTGTGGGGCAT-TCCA 592 *** * * *** * ** * * **** * * * * ** consensus_2527#0 CTCGCGCTGGCAGATACAGTATCTACGTGCAACATTGATTTTGGCGGAGGCGGTTTGCGA 578 consensus_2527#1 CTCGGAGAGCGAGGAAGAGCTGCTGAATCTAATCCCCATC------------GTACGTGA 640 **** * ** * ** ** * ** ** ** * ** consensus_2527#0 TCGATGCTGCCAAAACGGCGATCGCGAAGGAAAATTTTGACCGGCGTACCGAACACGGAA 638 consensus_2527#1 AAGG-GCAACCGAAGTGGCACGTGCTGAAGGA---------------------------- 671 * ** ** ** *** ** * * * consensus_2527#0 AACATTTCGACCGATTCGCTGGGACGACTGCGGGGCTTCGATTTTTGCTAGCAATGAAAC 698 consensus_2527#1 ------------------------------------------------------------ consensus_2527#0 ATTACAAC 706 consensus_2527#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||