These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAGTGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTCCCGTTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAACGCGTGGTGGAAATATTGGAAGGGAGATACATTTCTGGAAACTCGCTGCCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGTGGTGCTGGACTTTGCCGCCAATCTGGAGGAGTACAACGGGACGGGCACACTGTACGTCACGTACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGACCGGCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATCCAAACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCGATTACATGATAGCTTCGTTCCGGAAAT] [+] EMBL BM612052 [CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAGTGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTCCCGTTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAACGCGTGGTGGAAATATTGGAAGGGAGATACATTTCTGGAAACTCGCTGCCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGTGGTGCTGGACTTTGCCGCCAATCTGGAGGAGTACAACGGGACGGGCACACTGTACGTCACGTACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGACCGGCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATCCAAACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCGATTACATGATAGCTTCGTTCCGGAAAT] consensusID : consensus_2528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [CGCCGAGTTACTGTTTCGCGTGATAGGAGCGCTTCTCGTTTGGCGGGCTCCCGGTTCACAGTGCGTATTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAACGCGTGGTGGAAATATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGACGGATTGGGTGGTGCTGGACTTTGGCGCCAATCTGGGAGGAGT] [+] EMBL AL931148 [CGCCGAGTTACTGTTTCGCGTGATAGGAGCGCTTCTCGTTTGGCGGGCTCCCGGTTCACAGTGCGTATTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAACGCGTGGTGGAAATATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGACGGATTGGGTGGTGCTGGACTTTGGCGCCAATCTGGGAGGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2528#0 CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAG 60 consensus_2528#1 ------------------------------------------------------------ consensus_2528#0 TGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTC 120 consensus_2528#1 --------CGCCGAGTTAC-TGTTTCGC-GTGATAGGAGCGCTTCTCGTTTGGCGGGCTC 50 ** *** ******** ************************* ***** consensus_2528#0 CCG-TTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAA 179 consensus_2528#1 CCGGTTCACAGTGC-GTA-TTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAA- 107 *** ********** *** ***************** ********************** consensus_2528#0 CGCGTGGTGGAAATATTGGAAGGGAGATACATTT-CTGGAAACTCGCTGCCAATTGCAGA 238 consensus_2528#1 CGCGTGGTGGAAATATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGC-AATTGCAGA 166 ***************** ******** ******* *************** ********* consensus_2528#0 CTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTT 298 consensus_2528#1 CTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATT 226 ********************************************************* ** consensus_2528#0 TCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGA 358 consensus_2528#1 TCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTT--CGGA 284 ****************************************** ***** ***** **** consensus_2528#0 AATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGT 418 consensus_2528#1 AATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGG-ACGG-ATTGG-GT 341 ********************************************** **** ***** ** consensus_2528#0 GGTGCTGGACTTTGCCGCCAATCTGG-AGGAGTACAACGGGACGGGCACACTGTACGTCA 477 consensus_2528#1 GGTGCTGGACTTTGGCGCCAATCTGGGAGGAGT--------------------------- 374 ************** *********** ****** consensus_2528#0 CGTACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGA 537 consensus_2528#1 ------------------------------------------------------------ consensus_2528#0 CCGGCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATC 597 consensus_2528#1 ------------------------------------------------------------ consensus_2528#0 CAAACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCG 657 consensus_2528#1 ------------------------------------------------------------ consensus_2528#0 ATTACATGATAGCTTCGTTCCGGAAAT 684 consensus_2528#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||