These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGAATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAAAAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTTGTGTGTGAATTAAAGCAGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGCTGTTGTTATTGTTGGGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTGCTTCCGCGCGTGTGTGTGTGCGCACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAAGCAAAAGAAAAAAAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGCGGGTGAAAGTTCCGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAATATACCTGCCGTGCCTACTGCGCCAGTGTATG] [+] EMBL BM632997 [CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGAATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAAAAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTTGTGTGTGAATTAAAGCAGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGCTGTTGTTATTGTTGGGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTGCTTCCGCGCGTGTGTGTGTGCGCACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAAGCAAAAGAAAAAAAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGCGGGTGAAAGTTCCGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAATATACCTGCCGTGCCTACTGCGCCAGTGTATG] consensusID : consensus_254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GACCCACGCGTCCGAAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTGTGTGTGAATTAAAGCAGAGGAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGTTGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGTGCTTCCGCGCGTGTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT] [+] EMBL BM626860 [GACCCACGCGTCCGAAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTGTGTGTGAATTAAAGCAGAGGAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGTTGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGTGCTTCCGCGCGTGTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_254#0 CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGA 60 consensus_254#1 ------------------------------------------------------------ consensus_254#0 ATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAA 120 consensus_254#1 ----------------------------------------------GACCCACGCGTCCG 14 * ** consensus_254#0 AAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTT-GTGTGTGAATTAAAG 179 consensus_254#1 AAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTGTGTGTGAATTAAAG 74 **************************** *************** *************** consensus_254#0 CAGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAA 239 consensus_254#1 CAGAGGAAAAAAA--CTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAA 132 **** ******** ********************************************* consensus_254#0 CGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGC 299 consensus_254#1 CGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGT 192 *********************************************************** consensus_254#0 TGTTGTTATTGTTG---GGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAG 356 consensus_254#1 TGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAATTCCTCCAGGAAG 252 ****** ****** *************** *** ********************** consensus_254#0 AAGTGGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTG------CTTCCGCGCGT 410 consensus_254#1 AAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGTGCTTCCGCGCGT 312 *********** ********* ********************* *********** consensus_254#0 GTGTGTGTGCGC--ACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAA 468 consensus_254#1 GTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT-------------------- 352 ********* ** ************************** consensus_254#0 GCAAAAGAAAAAAAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGC 528 consensus_254#1 ------------------------------------------------------------ consensus_254#0 GGGTGAAAGTTCCGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAAT 588 consensus_254#1 ------------------------------------------------------------ consensus_254#0 ATACCTGCCGTGCCTACTGCGCCAGTGTATG 619 consensus_254#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||