cluster # 254

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Anopheles gambiae
cluster # 254 cluster # 254 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_254#0 length = 619 sequences # 1

consensus_254#1 length = 352 sequences # 1

consensusID : consensus_254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGAATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAAAAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTTGTGTGTGAATTAAAGCAGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGCTGTTGTTATTGTTGGGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTGCTTCCGCGCGTGTGTGTGTGCGCACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAAGCAAAAGAAAAAAAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGCGGGTGAAAGTTCCGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAATATACCTGCCGTGCCTACTGCGCCAGTGTATG]

[+] EMBL BM632997             [CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGAATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAAAAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTTGTGTGTGAATTAAAGCAGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGCTGTTGTTATTGTTGGGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTGCTTCCGCGCGTGTGTGTGTGCGCACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAAGCAAAAGAAAAAAAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGCGGGTGAAAGTTCCGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAATATACCTGCCGTGCCTACTGCGCCAGTGTATG]




>consensus_254#0
CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGA
ATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAA
AAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTTGTGTGTGAATTAAAGC
AGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAAC
GTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGCT
GTTGTTATTGTTGGGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAGAAGT
GGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTGCTTCCGCGCGTGTGTGTGTGC
GCACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAAGCAAAAGAAAAA
AAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGCGGGTGAAAGTTC
CGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAATATACCTGCCGTG
CCTACTGCGCCAGTGTATG

consensusID : consensus_254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [GACCCACGCGTCCGAAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTGTGTGTGAATTAAAGCAGAGGAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGTTGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGTGCTTCCGCGCGTGTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT]

[+] EMBL BM626860             [GACCCACGCGTCCGAAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTGTGTGTGAATTAAAGCAGAGGAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGTTGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAATTCCTCCAGGAAGAAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGTGCTTCCGCGCGTGTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT]




>consensus_254#1
GACCCACGCGTCCGAAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTG
TGTGTGAATTAAAGCAGAGGAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACAC
GGGCGAAGGTAACGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCG
TTTTGCTGTTGTTGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAAT
TCCTCCAGGAAGAAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGT
GCTTCCGCGCGTGTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_254#0      CCGCTCTCGCAAAGCGAACGGACGTGTGTGTGCAGCGCTGCGTGCGTCTTGTCGCGTCGA 60
consensus_254#1      ------------------------------------------------------------
                                                                                 

consensus_254#0      ATTTGTTTTGTTTTAAATTCTAACAGCCCAGTTGCGTTAGCATTCTAAAAAGCGAACGAA 120
consensus_254#1      ----------------------------------------------GACCCACGCGTCCG 14
                                                                    *    **      

consensus_254#0      AAAAAAAATCCTTCTTTGCCGCCGATCTCGGAAGTGCGTTTTTT-GTGTGTGAATTAAAG 179
consensus_254#1      AAAAAAAATCCTTCTTTGCCGCCGATCTTGGAAGTGCGTTTTTTTGTGTGTGAATTAAAG 74
                     **************************** *************** ***************

consensus_254#0      CAGAAGAAAAAAAAACTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAA 239
consensus_254#1      CAGAGGAAAAAAA--CTACCGCTTCGACACGTGTGCCTGCGTACACACGGGCGAAGGTAA 132
                     **** ********  *********************************************

consensus_254#0      CGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGC 299
consensus_254#1      CGTGGGACGGCATATCGTGTCAGCTTTGACCGTTTGTTGCGTTTGCCGTTTTGCTGTTGT 192
                     *********************************************************** 

consensus_254#0      TGTTGTTATTGTTG---GGGTTCTTCTTCTGTTTCTCGAAGCCCGAATTCCTCCAGGAAG 356
consensus_254#1      TGTTGTCGTTGTTGTGGAGGTTCTTCTTCTGTTGCTCTAAGCCCGAATTCCTCCAGGAAG 252
                     ******  ******    *************** *** **********************

consensus_254#0      AAGTGGTTGCCTGTGCGCGCCTGTTGCTCTGTGAGTGTGTGTG------CTTCCGCGCGT 410
consensus_254#1      AAGTGGTTGCCCGTGCGCGCCCGTTGCTCTGTGAGTGTGTGTGTGTGTGCTTCCGCGCGT 312
                     *********** ********* *********************      ***********

consensus_254#0      GTGTGTGTGCGC--ACTGATCTGTGATCTTGTTCACGGTTGAGCCAAAAGTTAAAAGAAA 468
consensus_254#1      GTGTGTGTGTGCTCACTGATCTGTGATCTTGTTCACGGTT-------------------- 352
                     ********* **  **************************                    

consensus_254#0      GCAAAAGAAAAAAAAGAAGTGTTGACGCATACGGAAGGGGGCGAAAATAATCTCCAACGC 528
consensus_254#1      ------------------------------------------------------------
                                                                                 

consensus_254#0      GGGTGAAAGTTCCGAAAAAGATCGATCGATTCCTGCTCCTCATCCCCCCCTCCCTGCAAT 588
consensus_254#1      ------------------------------------------------------------
                                                                                 

consensus_254#0      ATACCTGCCGTGCCTACTGCGCCAGTGTATG 619
consensus_254#1      -------------------------------