These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATTTTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACACTATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTTTTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAACCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAAAATAATATAGAAACATGTTTATATTCGACTATTAGGAAATTGGCATGTTAATGTTAATTAACGTAAATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAAATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA] [+] EMBL BX609374 [CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATTTTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACACTATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTTTTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAACCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAAAATAATATAGAAACATGTTTATATTCGACTATTAGGAAATTGGCATGTTAATGTTAATTAACGTAAATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAAATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA] consensusID : consensus_2540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [AAGAATCGCCCCGAGGATTATTTGCGTAAACATTTTTTTTTACAATATTCTGTCAATATATCCAAGTATCCCAATAGCATGGAGCAAAGCAAACAACCAAATGATAACGTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTGGTATTCATACAGAAGCTTCTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAACAATAATATAGAAACATGTTTACTATTCGACTATTAGGAAATTGGCCATGTTAATGTTAATTAACGTAACATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAACATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGAAACCTGTCTATAGAATTATCAAGGAACNTTTGCAAATTCATGAACAACA] [+] EMBL AL931277 [AAGAATCGCCCCGAGGATTATTTGCGTAAACATTTTTTTTTACAATATTCTGTCAATATATCCAAGTATCCCAATAGCATGGAGCAAAGCAAACAACCAAATGATAACGTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTGGTATTCATACAGAAGCTTCTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAACAATAATATAGAAACATGTTTACTATTCGACTATTAGGAAATTGGCCATGTTAATGTTAATTAACGTAACATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAACATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGAAACCTGTCTATAGAATTATCAAGGAACNTTTGCAAATTCATGAACAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2540#0 CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATT 60 consensus_2540#1 ------------------------------------------------------------ consensus_2540#0 TTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACAC 120 consensus_2540#1 ------------------------------------------------------------ consensus_2540#0 TATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTT 180 consensus_2540#1 ------------------AAGAATCGCCC--CGAGGATTATTT-GCGTAAACATTTTTTT 39 ** * * * *** ****** **************** consensus_2540#0 TTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAA 240 consensus_2540#1 TT-ACAATATTCTGT-CAATATATCCAAGTATCCCAATAGCAT-GGAGCAAAGCAAACAA 96 ** ************ *************************** **************** consensus_2540#0 CCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAAT 300 consensus_2540#1 CCAAATGATAACGT-GTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAAT 155 ************** ********************************************* consensus_2540#0 CATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTA 360 consensus_2540#1 CATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTA 215 ************************************************************ consensus_2540#0 GACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTT 420 consensus_2540#1 GACGCTGT-GGTATTCATACAGAAGCTTCTTT-GGTACGAAGCATATTATACTTTCGTTT 273 ******** *********************** *************************** consensus_2540#0 TTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATAC 480 consensus_2540#1 TTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATAC 333 ************************************************************ consensus_2540#0 ATGGAAAAATACCATTTATTGAA-AATAATATAGAAACATGTTTA-TATTCGACTATTAG 538 consensus_2540#1 ATGGAAAAATACCATTTATTGAACAATAATATAGAAACATGTTTACTATTCGACTATTAG 393 *********************** ********************* ************** consensus_2540#0 GAAATTGGC-ATGTTAATGTTAATTAACGTAA-ATCTTAGAACGTTCTTTACTGCAACAA 596 consensus_2540#1 GAAATTGGCCATGTTAATGTTAATTAACGTAACATCTTAGAACGTTCTTTACTGCAACAA 453 ********* ********************** *************************** consensus_2540#0 AACGTATACATTAAA-ATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA- 654 consensus_2540#1 AACGTATACATTAAACATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGAA 513 *************** ******************************************* consensus_2540#0 ------------------------------------------------ consensus_2540#1 ACCTGTCTATAGAATTATCAAGGAACNTTTGCAAATTCATGAACAACA 561 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||