These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence [CAGAATCGCCCGAGGTGTTAAGAAAGCTTCGGAGCGTAGNGTAGTGCTGACGGCAGGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAACGCTATCGTTTCCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAATACTGGTCTGTTCTCAATGTCTCGNTCAGNATGTCGNACAATTTCGGGCTCNNCTATTTCACCTCTTCCTTCTNCTCNTCTCGCTNTCCCGATATGCGACTACAGATATCCCTACACAGGACGGCACACGNTCCAGCCCGCAACCGACCCCAATATAGAGCTCCCCATAANAAACAAGGGAAATCGGCTAGGAAAACGAACCAGGGTAGACACTC] [+] EMBL AL931328 [CAGAATCGCCCGAGGTGTTAAGAAAGCTTCGGAGCGTAGNGTAGTGCTGACGGCAGGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAACGCTATCGTTTCCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAATACTGGTCTGTTCTCAATGTCTCGNTCAGNATGTCGNACAATTTCGGGCTCNNCTATTTCACCTCTTCCTTCTNCTCNTCTCGCTNTCCCGATATGCGACTACAGATATCCCTACACAGGACGGCACACGNTCCAGCCCGCAACCGACCCCAATATAGAGCTCCCCATAANAAACAAGGGAAATCGGCTAGGAAAACGAACCAGGGTAGACACTC] consensusID : consensus_2545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTTTCGGAGCGTAGGTAGTGCGACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAAGCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGTTGTTCTCAATGTTCTCGTCAGTTTGTCGTAGAATTTGGTTTTATTTTTCT] [+] EMBL BX606567 [CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTTTCGGAGCGTAGGTAGTGCGACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTGAGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTTTTTAATTATTTACGAATGCATTTATTGTGCGATTTAGGAAGCGCCACCATAATTTAAACGTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGATGGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGATGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCACTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGCAAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGGGAATGGCACCGAAAGCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACGTGTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGTTGTTCTCAATGTTCTCGTCAGTTTGTCGTAGAATTTGGTTTTATTTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2545#0 -----------------------------CAGAATCGCCCGAG-GTGTTAA-GAAAGCTT 29 consensus_2545#1 CAAATCCAAAATAATTTTTTGTTTATTATTTTCATTATTTGTTTGTGTTAAAGAAAGCTT 60 ** * ******* ******** consensus_2545#0 -CGGAGCGTAGNGTAGTGCTGACGGCAGGGAATCGGTTGATGGAATGAGGATGCGTAGTG 88 consensus_2545#1 TCGGAGCGTAGG-TAGTGC-GACGGCAAGGAATCGGTTGATGGAATGAGGATGCGTAGTG 118 ********** ****** ******* ******************************** consensus_2545#0 AGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTT 148 consensus_2545#1 AGGAATTCTCTTTTTTCTTTTCCGTTGAAGAATCGAATTGTGATACAACTTGCGTTTTTT 178 ************************************************************ consensus_2545#0 TTTAATTATTTACGAATGCATTTATTTGTGCGATTTAGGAAGCGCCACCATAATTTAAAC 208 consensus_2545#1 TTTAATTATTTACGAATGCATTTATT-GTGCGATTTAGGAAGCGCCACCATAATTTAAAC 237 ************************** ********************************* consensus_2545#0 GTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGAT 268 consensus_2545#1 GTGGCTCTAACGTGGCTTTTAGCGATTAAGTGCGCATTGGCGGGGTAAGGATGCGCTGAT 297 ************************************************************ consensus_2545#0 GGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGA 328 consensus_2545#1 GGTGCGGTAGTTCGCTCTGCTTACCGACATTCGTTTTGTTTTCGGTTGCATTGAATTGGA 357 ************************************************************ consensus_2545#0 TGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCA 388 consensus_2545#1 TGGAATGCCACCGCAAGTGCTTTCCGTGTGCGTTTTCACCTGTCACGTTCGTTCCCGCCA 417 ************************************************************ consensus_2545#0 CTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGC 448 consensus_2545#1 CTGGACGCCCAACGTGGCACGCGACAGTCCCATCAGCTATCAGGTGCTGGTTGCAACTGC 477 ************************************************************ consensus_2545#0 AAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGG 508 consensus_2545#1 AAATGCCATGAAAACATAACAAGCACAACATAATCTGTACTTAGGCCAGGCTGGAAATGG 537 ************************************************************ consensus_2545#0 GAATGGCACCGAAACGCTATCGTTTCCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACG 568 consensus_2545#1 GAATGGCACCGAAA-GCTATCGTTTTCTCTCAGCGCTGTGTGCGTGTGTGTGTGTGTACG 596 ************** ********** ********************************** consensus_2545#0 TGTTTGGCCGTGTGTCCGATTAACGGGCAACGCGCAATACTGGTCTGTTCTCAATGTCTC 628 consensus_2545#1 TGTT-GGCCGTGTGTCCGATTAACGGGCAACGCGCAGATATGGT-TGTTCTCAATGTTCT 654 **** ******************************* **** ************ consensus_2545#0 GNTCAGNATGTCGNACAATTTCGGGCTCNNCTATTTCACCTCTTCCTTCTNCTCNTCTCG 688 consensus_2545#1 CGTCAGTTTGTCGTAGAATTT--GGTTTTATTTTTCT----------------------- 689 **** ***** * ***** ** * * ** consensus_2545#0 CTNTCCCGATATGCGACTACAGATATCCCTACACAGGACGGCACACGNTCCAGCCCGCAA 748 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 CCGACCCCAATATAGAGCTCCCCATAANAAACAAGGGAAATCGGCTAGGAAAACGAACCA 808 consensus_2545#1 ------------------------------------------------------------ consensus_2545#0 GGGTAGACACTC 820 consensus_2545#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||