cluster # 2558

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Anopheles gambiae
cluster # 2558 cluster # 2558 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2558#0 length = 642 sequences # 1

consensus_2558#1 length = 576 sequences # 1

consensusID : consensus_2558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAGTGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATCGCGACTACACACGACCCTGTCCGCCTGTGTTGGTTGTTTCTGTTGTGTCGTTGTCTGTTGAGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCCATTTCCAATGCGCACAACGCGTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGTGTGTGTGTGTATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACCAAGTGTGGTGATCATTCATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG]

[+] EMBL BM615306             [CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAGTGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATCGCGACTACACACGACCCTGTCCGCCTGTGTTGGTTGTTTCTGTTGTGTCGTTGTCTGTTGAGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCCATTTCCAATGCGCACAACGCGTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGTGTGTGTGTGTATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACCAAGTGTGGTGATCATTCATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG]




>consensus_2558#0
CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAG
TGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATC
GCGACTACACACGACCCTGTCCGCCTGTGTTGGTTGTTTCTGTTGTGTCGTTGTCTGTTG
AGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCCATTTCCAATGCGCACAACGC
GTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGTGTGTGTGTGT
ATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACCAAGTGTGGTGATCATT
CATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACG
AACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCG
AAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTT
CAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGA
CAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG

consensusID : consensus_2558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CCGCGATCGATTGCGGATGTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTAATTCGGATCGGTGCTTCGGTGTAAAGGGCACCTTGATAAGTGCGAACCACCGAGGTGTACTTCTTGATCGGCGAAGATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCGCTGCGGCATTGCGCTGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACAACGCAAACGCAAAAGTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGAGGATGTATCCCACGAGCAGGTGTCACGAACGACGAGCGATACGCTGGGCC]

[+] EMBL BM593840             [CCGCGATCGATTGCGGATGTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTAATTCGGATCGGTGCTTCGGTGTAAAGGGCACCTTGATAAGTGCGAACCACCGAGGTGTACTTCTTGATCGGCGAAGATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCGCTGCGGCATTGCGCTGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACAACGCAAACGCAAAAGTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGAGGATGTATCCCACGAGCAGGTGTCACGAACGACGAGCGATACGCTGGGCC]




>consensus_2558#1
CCGCGATCGATTGCGGATGTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTA
ATTCGGATCGGTGCTTCGGTGTAAAGGGCACCTTGATAAGTGCGAACCACCGAGGTGTAC
TTCTTGATCGGCGAAGATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCG
CTGCGGCATTGCGCTGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACA
ACGCAAACGCAAAAGTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGT
GTGTGTGTGGACCCAGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAA
AACCAGTTCTTCGCGAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTC
TCGCAACAATGCTCATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCA
CGAACGAGGCCGAAGACTCCAGCTATGACAGTGATTGCGATGGGGAGGATGTATCCCACG
AGCAGGTGTCACGAACGACGAGCGATACGCTGGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2558#0      CCGAGACGAACTGGTCGTGTGCGTGCGTGTGGAGGATCGCGATCGCGAGTTTTAAAAAAG 60
consensus_2558#1      ------------------------------------------------------------
                                                                                  

consensus_2558#0      TGTGCGCTCGCCAGCCGCCCCTCCCGCACCCTCTCCTCCCTTCCCCGAGTCACGCCGATC 120
consensus_2558#1      ------------------------------------------CCGCGATCGATTGCGGAT 18
                                                                ** ***   *   **   

consensus_2558#0      GCGACTACACACG--ACCCTGTCCGCCT--GTGTTGGTTGT--TTCTGTTGTGTCGTTGT 174
consensus_2558#1      GTGGTGGAGTGTTGTACTCGTACCGCTCAAGTGCAGATTGTAATTCGGATCGGTGCTTCG 78
                      * *            ** *   ****    ***  * ****  *** * *  **  **  

consensus_2558#0      CTGTTGAGTCGCTTTTCGGGTAGGAAAGGGTCGCCGAAATCAGGCC----ATTTCCAATG 230
consensus_2558#1      GTGTAAAGGGCACCTT--GATAAGTGCGAACCACCGAGGTGTACTTCTTGATCGGCGAAG 136
                       ***  **      **  * ** *   *   * ****  *          **   * * *

consensus_2558#0      CGCACAACGCGTACCGGATCTAGCGATTTTACCACCCGAGTACGTGTGAGGTGTGTTTGT 290
consensus_2558#1      ATCGTCCCGAGTAGTGCGTCAAACGGTTGCGTTCCCAGGCTGCGC-TGCGGCAT-TGCGC 194
                        *    ** ***  *  ** * ** **      ** *  * **  ** **  * *  * 

consensus_2558#0      GTGTGTGTGTATGAGTGTTGTGTTGCCGTGTGTCGGCCACTTGATTTTATAACC----AA 346
consensus_2558#1      TGGTGCTTCCAATCCCGTCACGATCGATCGATTTGCTGACGTCACAACGCAAACGCAAAA 254
                        ***  *  *     **   * *     *  * *   ** * *      ** *    **

consensus_2558#0      GTGTGGTGATCATTCATAAGATTAGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCC 406
consensus_2558#1      GTGTGGTGATCATTCATAAGATTACTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCC 314
                      ************************ ***********************************

consensus_2558#0      AGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGC 466
consensus_2558#1      AGAATCGTTGCACGAACCAGTTCCTAAATTTCTTTACAAAAAAGAAAACCAGTTCTTCGC 374
                      ************************************************************

consensus_2558#0      GAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTC 526
consensus_2558#1      GAACTAAGACGGCGAAACGATAAACGCCACCAAAACAGCATCACTCTCGCAACAATGCTC 434
                      ************************************************************

consensus_2558#0      ATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAA 586
consensus_2558#1      ATCGCAACGAATTTCAATCAGAAGCAATTCATTGACTCGCTGTGCACGAACGAGGCCGAA 494
                      ************************************************************

consensus_2558#0      GACTCCAGCTATGACAGTGATTGCGATGGGGGAGGATGTATTCCCACGAGCAGGTG---- 642
consensus_2558#1      GACTCCAGCTATGACAGTGATTGCGATGGGG-AGGATGTAT-CCCACGAGCAGGTGTCAC 552
                      ******************************* ********* **************    

consensus_2558#0      ------------------------
consensus_2558#1      GAACGACGAGCGATACGCTGGGCC 576