These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCATGCTCTCTCGAGGGCATGATATTACGTCCAGTGTCACGGGAACGAACACCCCAGATTGGGGTTGAGTGTGATAGGAAAAAGGGCCAGTAGGTGGATAAGATACAATTAGTACGAAAGTGTTGTAAGCGGTATTAACAGGAAGTAGTCCGAAATCACGATCATCAGTGTGATCTTGCGTGTGAAGAACAACTTCTTGCCAATTCTGCTTGTCAGTGGCAACAAGACATCATCAGAAAGCGGCATTGGAATAACTCTTCTTTACTCTTCCGCCGCGAAACCGATGCGGGCCAATGCGCCGCCCAGTCTTACCACCACCCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTCACTTCAGTGAATTAGTCGTTTTTTGGTTGACTGTGCCTCCAACTATAAGGCTTTTTTTTCGGGAGTGGCCGACACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCGTCATCTTGATCATCATTCCATCAAAATGTCCAAGACGACCCCGAGCACCAGTAGTGCCAG] [+] EMBL BM632764 [CCGCATGCTCTCTCGAGGGCATGATATTACGTCCAGTGTCACGGGAACGAACACCCCAGATTGGGGTTGAGTGTGATAGGAAAAAGGGCCAGTAGGTGGATAAGATACAATTAGTACGAAAGTGTTGTAAGCGGTATTAACAGGAAGTAGTCCGAAATCACGATCATCAGTGTGATCTTGCGTGTGAAGAACAACTTCTTGCCAATTCTGCTTGTCAGTGGCAACAAGACATCATCAGAAAGCGGCATTGGAATAACTCTTCTTTACTCTTCCGCCGCGAAACCGATGCGGGCCAATGCGCCGCCCAGTCTTACCACCACCCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTCACTTCAGTGAATTAGTCGTTTTTTGGTTGACTGTGCCTCCAACTATAAGGCTTTTTTTTCGGGAGTGGCCGACACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCGTCATCTTGATCATCATTCCATCAAAATGTCCAAGACGACCCCGAGCACCAGTAGTGCCAG] consensusID : consensus_2567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [GAATNGCCGAGGTTATTCTTCCACCGCGAATCGATGCGGGCCATGCGCCACCCAATCTTACCANCACCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTAACTCCAGTGAATTAGTCGTTTTTTTTTTTTTTGGTGTACTGTGCCTCCAACTATAAGGTTTTTTTTTTCGGGAGTGGCCGAAACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCATCATCTTGATCATCATTCCATCAAAATGTCCAAGACGATCCCGAGCACCAGTAGTGCCAGTGCGTCCAACCAAGTTGGTTGATTTGTCACCATTTGTCGTCGGATTGGTTCGAAACTTCGGAAATGGCAGACCCAACGATACAGACGTTCTGCTGCCACAACGGATACGATCACCGCCGCCATCAAGCTGATGTCCGAGTTCGATACGGACGGGTACATCGTGGTGTGCTTGGGTATCGTCCATATTCGGAATAGCCGGTGCCGCT] [+] EMBL AL931624 [GAATNGCCGAGGTTATTCTTCCACCGCGAATCGATGCGGGCCATGCGCCACCCAATCTTACCANCACCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTAACTCCAGTGAATTAGTCGTTTTTTTTTTTTTTGGTGTACTGTGCCTCCAACTATAAGGTTTTTTTTTTCGGGAGTGGCCGAAACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCATCATCTTGATCATCATTCCATCAAAATGTCCAAGACGATCCCGAGCACCAGTAGTGCCAGTGCGTCCAACCAAGTTGGTTGATTTGTCACCATTTGTCGTCGGATTGGTTCGAAACTTCGGAAATGGCAGACCCAACGATACAGACGTTCTGCTGCCACAACGGATACGATCACCGCCGCCATCAAGCTGATGTCCGAGTTCGATACGGACGGGTACATCGTGGTGTGCTTGGGTATCGTCCATATTCGGAATAGCCGGTGCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2567#0 CCGCATGCTCTCTCGAGGGCATGATATTACGTCCAGTGTCACGGGAACGAACACCCCAGA 60 consensus_2567#1 ------------------------------------------------------------ consensus_2567#0 TTGGGGTTGAGTGTGATAGGAAAAAGGGCCAGTAGGTGGATAAGATACAATTAGTACGAA 120 consensus_2567#1 ------------------------------------------------------------ consensus_2567#0 AGTGTTGTAAGCGGTATTAACAGGAAGTAGTCCGAAATCACGATCATCAGTGTGATCTTG 180 consensus_2567#1 ------------------------------------------------------------ consensus_2567#0 CGTGTGAAGAACAACTTCTTGCCAATTCTGCTTGTCAGTGGCAACAAGACATCATCAGAA 240 consensus_2567#1 ------------------------------------------------------------ consensus_2567#0 AGCGGCATTGGAATAACTCTTCTTTACTCTTCCGCCGCGAAACCGATGCGGGCCAATGCG 300 consensus_2567#1 ----------GAATNGC-CGAGGTTATTCTTCCACCGCGAA-TCGATGCGGGCCA-TGCG 47 **** * * *** ****** ******* ************ **** consensus_2567#0 CCGCCCAGTCTTACCACCACCCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATC 360 consensus_2567#1 CCACCCAATCTTACCANCACCC-ATTATCAGTCATCTTAGAACTCGTGCATTGCATGATC 106 ** **** ******** ***** ************************************* consensus_2567#0 GCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGC 420 consensus_2567#1 GCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGC 166 ************************************************************ consensus_2567#0 TTTTTTATGCATCCTGAGCTACTCCCCTCACTTCAGTGAATTAGTCGTTTTTT------- 473 consensus_2567#1 TTTTTTATGCATCCTGAGCTACTCCCCTAACTCCAGTGAATTAGTCGTTTTTTTTTTTTT 226 **************************** *** ******************** consensus_2567#0 -GGTTGACTGTGCCTCCAACTATAAGGCTTTTTTTT-CGGGAGTGGCCGACACAAGTGAT 531 consensus_2567#1 TGGTGTACTGTGCCTCCAACTATAAGGTTTTTTTTTTCGGGAGTGGCCGAAACAAGTGAT 286 *** ********************* ******** ************* ********* consensus_2567#0 AACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCGTCATCTTGATCATCATTCCATCAAAAT 591 consensus_2567#1 AACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCATCATCTTGATCATCATTCCATCAAAAT 346 ******************************** *************************** consensus_2567#0 GTCCAAGACGACCCCGAGCACCAGTAGTGCCAG--------------------------- 624 consensus_2567#1 GTCCAAGACGATCCCGAGCACCAGTAGTGCCAGTGCGTCCAACCAAGTTGGTTGATTTGT 406 *********** ********************* consensus_2567#0 ------------------------------------------------------------ consensus_2567#1 CACCATTTGTCGTCGGATTGGTTCGAAACTTCGGAAATGGCAGACCCAACGATACAGACG 466 consensus_2567#0 ------------------------------------------------------------ consensus_2567#1 TTCTGCTGCCACAACGGATACGATCACCGCCGCCATCAAGCTGATGTCCGAGTTCGATAC 526 consensus_2567#0 ----------------------------------------------------------- consensus_2567#1 GGACGGGTACATCGTGGTGTGCTTGGGTATCGTCCATATTCGGAATAGCCGGTGCCGCT 585 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||