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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CCGCATGCTCTCTCGAGGGCATGATATTACGTCCAGTGTCACGGGAACGAACACCCCAGATTGGGGTTGAGTGTGATAGGAAAAAGGGCCAGTAGGTGGATAAGATACAATTAGTACGAAAGTGTTGTAAGCGGTATTAACAGGAAGTAGTCCGAAATCACGATCATCAGTGTGATCTTGCGTGTGAAGAACAACTTCTTGCCAATTCTGCTTGTCAGTGGCAACAAGACATCATCAGAAAGCGGCATTGGAATAACTCTTCTTTACTCTTCCGCCGCGAAACCGATGCGGGCCAATGCGCCGCCCAGTCTTACCACCACCCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTCACTTCAGTGAATTAGTCGTTTTTTGGTTGACTGTGCCTCCAACTATAAGGCTTTTTTTTCGGGAGTGGCCGACACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCGTCATCTTGATCATCATTCCATCAAAATGTCCAAGACGACCCCGAGCACCAGTAGTGCCAG]
[+] EMBL BM632764 [CCGCATGCTCTCTCGAGGGCATGATATTACGTCCAGTGTCACGGGAACGAACACCCCAGATTGGGGTTGAGTGTGATAGGAAAAAGGGCCAGTAGGTGGATAAGATACAATTAGTACGAAAGTGTTGTAAGCGGTATTAACAGGAAGTAGTCCGAAATCACGATCATCAGTGTGATCTTGCGTGTGAAGAACAACTTCTTGCCAATTCTGCTTGTCAGTGGCAACAAGACATCATCAGAAAGCGGCATTGGAATAACTCTTCTTTACTCTTCCGCCGCGAAACCGATGCGGGCCAATGCGCCGCCCAGTCTTACCACCACCCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTCACTTCAGTGAATTAGTCGTTTTTTGGTTGACTGTGCCTCCAACTATAAGGCTTTTTTTTCGGGAGTGGCCGACACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCGTCATCTTGATCATCATTCCATCAAAATGTCCAAGACGACCCCGAGCACCAGTAGTGCCAG]
consensusID : consensus_2567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[GAATNGCCGAGGTTATTCTTCCACCGCGAATCGATGCGGGCCATGCGCCACCCAATCTTACCANCACCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTAACTCCAGTGAATTAGTCGTTTTTTTTTTTTTTGGTGTACTGTGCCTCCAACTATAAGGTTTTTTTTTTCGGGAGTGGCCGAAACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCATCATCTTGATCATCATTCCATCAAAATGTCCAAGACGATCCCGAGCACCAGTAGTGCCAGTGCGTCCAACCAAGTTGGTTGATTTGTCACCATTTGTCGTCGGATTGGTTCGAAACTTCGGAAATGGCAGACCCAACGATACAGACGTTCTGCTGCCACAACGGATACGATCACCGCCGCCATCAAGCTGATGTCCGAGTTCGATACGGACGGGTACATCGTGGTGTGCTTGGGTATCGTCCATATTCGGAATAGCCGGTGCCGCT]
[+] EMBL AL931624 [GAATNGCCGAGGTTATTCTTCCACCGCGAATCGATGCGGGCCATGCGCCACCCAATCTTACCANCACCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATCGCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGCTTTTTTATGCATCCTGAGCTACTCCCCTAACTCCAGTGAATTAGTCGTTTTTTTTTTTTTTGGTGTACTGTGCCTCCAACTATAAGGTTTTTTTTTTCGGGAGTGGCCGAAACAAGTGATAACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCATCATCTTGATCATCATTCCATCAAAATGTCCAAGACGATCCCGAGCACCAGTAGTGCCAGTGCGTCCAACCAAGTTGGTTGATTTGTCACCATTTGTCGTCGGATTGGTTCGAAACTTCGGAAATGGCAGACCCAACGATACAGACGTTCTGCTGCCACAACGGATACGATCACCGCCGCCATCAAGCTGATGTCCGAGTTCGATACGGACGGGTACATCGTGGTGTGCTTGGGTATCGTCCATATTCGGAATAGCCGGTGCCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2567#0 CCGCATGCTCTCTCGAGGGCATGATATTACGTCCAGTGTCACGGGAACGAACACCCCAGA 60
consensus_2567#1 ------------------------------------------------------------
consensus_2567#0 TTGGGGTTGAGTGTGATAGGAAAAAGGGCCAGTAGGTGGATAAGATACAATTAGTACGAA 120
consensus_2567#1 ------------------------------------------------------------
consensus_2567#0 AGTGTTGTAAGCGGTATTAACAGGAAGTAGTCCGAAATCACGATCATCAGTGTGATCTTG 180
consensus_2567#1 ------------------------------------------------------------
consensus_2567#0 CGTGTGAAGAACAACTTCTTGCCAATTCTGCTTGTCAGTGGCAACAAGACATCATCAGAA 240
consensus_2567#1 ------------------------------------------------------------
consensus_2567#0 AGCGGCATTGGAATAACTCTTCTTTACTCTTCCGCCGCGAAACCGATGCGGGCCAATGCG 300
consensus_2567#1 ----------GAATNGC-CGAGGTTATTCTTCCACCGCGAA-TCGATGCGGGCCA-TGCG 47
**** * * *** ****** ******* ************ ****
consensus_2567#0 CCGCCCAGTCTTACCACCACCCCATTATCAGTCATCTTAGAACTCGTGCATTGCATGATC 360
consensus_2567#1 CCACCCAATCTTACCANCACCC-ATTATCAGTCATCTTAGAACTCGTGCATTGCATGATC 106
** **** ******** ***** *************************************
consensus_2567#0 GCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGC 420
consensus_2567#1 GCGCGCGTCAAGCGTAAGGATTGGAAAGGGAGAGAGATTGATAAAGAGCGCAATCCGCGC 166
************************************************************
consensus_2567#0 TTTTTTATGCATCCTGAGCTACTCCCCTCACTTCAGTGAATTAGTCGTTTTTT------- 473
consensus_2567#1 TTTTTTATGCATCCTGAGCTACTCCCCTAACTCCAGTGAATTAGTCGTTTTTTTTTTTTT 226
**************************** *** ********************
consensus_2567#0 -GGTTGACTGTGCCTCCAACTATAAGGCTTTTTTTT-CGGGAGTGGCCGACACAAGTGAT 531
consensus_2567#1 TGGTGTACTGTGCCTCCAACTATAAGGTTTTTTTTTTCGGGAGTGGCCGAAACAAGTGAT 286
*** ********************* ******** ************* *********
consensus_2567#0 AACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCGTCATCTTGATCATCATTCCATCAAAAT 591
consensus_2567#1 AACCAGTGAGTCTTGTGCTGTGTGCTTCAAGCATCATCTTGATCATCATTCCATCAAAAT 346
******************************** ***************************
consensus_2567#0 GTCCAAGACGACCCCGAGCACCAGTAGTGCCAG--------------------------- 624
consensus_2567#1 GTCCAAGACGATCCCGAGCACCAGTAGTGCCAGTGCGTCCAACCAAGTTGGTTGATTTGT 406
*********** *********************
consensus_2567#0 ------------------------------------------------------------
consensus_2567#1 CACCATTTGTCGTCGGATTGGTTCGAAACTTCGGAAATGGCAGACCCAACGATACAGACG 466
consensus_2567#0 ------------------------------------------------------------
consensus_2567#1 TTCTGCTGCCACAACGGATACGATCACCGCCGCCATCAAGCTGATGTCCGAGTTCGATAC 526
consensus_2567#0 -----------------------------------------------------------
consensus_2567#1 GGACGGGTACATCGTGGTGTGCTTGGGTATCGTCCATATTCGGAATAGCCGGTGCCGCT 585
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||