These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGGGTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATGTCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTATTTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGATTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATCGAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGAAGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAATCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCAATTATGGTTAAAAACAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATTATAGGTATAAAGCTACAGTATAGC] [+] EMBL BM653342 [CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGGGTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATGTCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTATTTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGATTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATCGAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGAAGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAATCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCAATTATGGTTAAAAACAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATTATAGGTATAAAGCTACAGTATAGC] consensusID : consensus_2590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [TATGGCGAGTCAGTAGTGACACTCGTCATGTGATTCGATTTTGCACAGAATTCTACCCAACAATTATTCGTTCGACTGTTTGCACCAACAATCGAAAAGGAGTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTATTCTAAAAACATTTTCAAAAACTAAGCTAAAACTATTCATATAACACTCAAATGTATGCGGGTTAAATCTTCCAAAATTAAATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACTTATCGCTTCCGGAGGAGTTAAACGCAGCATGAAAAATAAACTTCGATTGTGGTTAAAAAACAACACAGCAAACTGTGCGCGCAAATGAAAAAAGGAAATCAAATTATAGCTATAAAGCTACAGTATAGCCGCTCAACTTAGGCCTATATAAAACTTAACGCCTAACGCCAAACATTTGGTAGTGTTTGCCCTGCCCTCGCTACATCGTGAGACTGTGCATATCCGAGTGGATTTCTCCGATCTTCTTCATCTTCAGCAAATCGTTCAG] [-] EMBL BX616632 [TATGGCGAGTCAGTAGTGACACTCGTCATGTGATTCGATTTTGCACAGAATTCTACCCAACAATTATTCGTTCGACTGTTTGCACCAACAATCGAAAAGGAGTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTATTCTAAAAACATTTTCAAAAACTAAGCTAAAACTATTCATATAACACTCAAATGTATGCGGGTTAAATCTTCCAAAATTAAATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACTTATCGCTTCCGGAGGAGTTAAACGCAGCATGAAAAATAAACTTCGATTGTGGTTAAAAAACAACACAGCAAACTGTGCGCGCAAATGAAAAAAGGAAATCAAATTATAGCTATAAAGCTACAGTATAGCCGCTCAACTTAGGCCTATATAAAACTTAACGCCTAACGCCAAACATTTGGTAGTGTTTGCCCTGCCCTCGCTACATCGTGAGACTGTGCATATCCGAGTGGATTTCTCCGATCTTCTTCATCTTCAGCAAATCGTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2590#0 CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGG 60 consensus_2590#1 ------------------------------------------------------------ consensus_2590#0 GTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATG 120 consensus_2590#1 ------------------------------------------------------------ consensus_2590#0 TCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTAT 180 consensus_2590#1 ------------------------------------------------------------ consensus_2590#0 TTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGA 240 consensus_2590#1 --------------------TATGGCGAGTCAGT--AGTGA-----CACTCGTCATGTGA 33 * ** * * * * ** ** ************* consensus_2590#0 TTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATC 300 consensus_2590#1 TTCGATTTTGCACAGAATTCTACCCAACAATTATTCGTTCGACTGTTTGCACCAACAATC 93 *********************** ******************************* **** consensus_2590#0 GAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGA 360 consensus_2590#1 GAAAAGGAGTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTATTCTAAA 153 ******** ******************************************** **** * consensus_2590#0 AGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAA 420 consensus_2590#1 AACATTTTCAAAAACTAAGCTAAAACTATTCATATAACACTCAAATGTATGCGGGTTAAA 213 * * * ***************** ************************ ** * ****** consensus_2590#0 TCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTA 480 consensus_2590#1 TCTTCCAAAATTAAATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTA 273 ************* ********************************************** consensus_2590#0 AAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCA 540 consensus_2590#1 AAATGATATTCTACTTATCGCTTCCGGAGGAGTTAAACGCAGCATGAAAAATAAACTTCG 333 ************** ****************** ****************** ****** consensus_2590#0 ATTATGGTTAAAAA----CAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATT 596 consensus_2590#1 ATTGTGGTTAAAAAACAACACAGCAAACTGTGCGCGCAAATGAAAAAAGGAAATCAAATT 393 *** ********** ** ********** ********** **** *********** consensus_2590#0 ATAGGTATAAAGCTACAGTATAGC------------------------------------ 620 consensus_2590#1 ATAGCTATAAAGCTACAGTATAGCCGCTCAACTTAGGCCTATATAAAACTTAACGCCTAA 453 **** ******************* consensus_2590#0 ------------------------------------------------------------ consensus_2590#1 CGCCAAACATTTGGTAGTGTTTGCCCTGCCCTCGCTACATCGTGAGACTGTGCATATCCG 513 consensus_2590#0 ------------------------------------------- consensus_2590#1 AGTGGATTTCTCCGATCTTCTTCATCTTCAGCAAATCGTTCAG 556 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||