These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGACATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGTTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGATCA] [+] EMBL BX611356 [CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGACATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGTTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGATCA] consensusID : consensus_2593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG] [+] EMBL BX605265 [AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2593#0 -----------CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG 49 consensus_2593#1 AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG 60 ************************************************* consensus_2593#0 ATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGT--CACCAATT 107 consensus_2593#1 ATAACTGAGTAGCT---TCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACG 117 ******* * * * * ** * ** * *** * **** ** ** * consensus_2593#0 GATGAGATAAATGTTAAAGGATT-----GTGAGTGGACTGCTAGGGAGCTG------TGT 156 consensus_2593#1 TACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTAT 177 * * ** ***** **** *** * * * **** * * consensus_2593#0 TTCTACAACGTT-----CCGCAAAACGACATG------------TATGATTAATTT---- 195 consensus_2593#1 TTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGT 237 ** * * ** * ** * * ** * * ****** * * consensus_2593#0 --ATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGT- 252 consensus_2593#1 TAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCC 297 * ** * *** ***** * * * * * * * * consensus_2593#0 -TTCCGGAACGAT----------TAACCTCCTTTGCAGA-CACCCACTGTTG-GATAAA- 298 consensus_2593#1 ATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAAT 357 * ** **** ** *** * * * **** * ** ** ****** consensus_2593#0 GTT----------------TCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTA 342 consensus_2593#1 GTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTA 417 *** ***************************************** consensus_2593#0 TGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTG 402 consensus_2593#1 TGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTG 477 ************************************************************ consensus_2593#0 GCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATT 462 consensus_2593#1 GCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATT 537 *********************************** ************************ consensus_2593#0 CATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACG 522 consensus_2593#1 CATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACG 597 ************************************************************ consensus_2593#0 TATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGT 582 consensus_2593#1 TATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG--------- 648 *************************************************** consensus_2593#0 GCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAA 642 consensus_2593#1 ------------------------------------------------------------ consensus_2593#0 TGGAAACGCAACGTCGATCA 662 consensus_2593#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||