These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCTGAAATCAAAACAAAGCAAAAAACCTCCACTCGTACGAGGAACACAAATGAAACGCTAATTTTAGCTAAGCTTACACCTTTTTGCAATAATTGTGACTAAATAGCAATAACACCATAAAGCGTTCAAAATTATCTTAAGTTAGCAACACACAAAAGATAAAACAAACCTCTCTACATTACACATCACATGGCTGTTGAACAAAGCGAAAGTGCCTAAAGATCATTCCAATACGACATTCTTCTAGAATTAACGAAACAAAGAGCAATTTAGTGTGGCCTTACCGAAATGTTCCGAACGCTAGGCGCCACCGTTCTGTTGCTGAAAATAAGCCTCACGATTGCGTATCGGCCTGTGTTCATCTACCATGGCATTCTTACTGGTGCGGATAGTATGGGGCATTTGGTCAATAGAATCCAGGAGGTTCACCCTGGCACGGTGGTGTACAATTTTGGACGTTTCGGCGGATGGGCCAGTCTGATAAATGCCTGGCATCAGGTGCAAGCGGCACACGACAACCTGAAATTAGTCTGCGATTTGCATCCGGACGAGGGCATCAACATGATCGGCTATTTCGCAGGGTGGTCTGCTGGGTCGGGCAGTGCTGCAGATCTATCCGGACCACTGGGGTGAAGACGTTCATCTCACTAAGCTCCCCGCAAGCGGGTC] [+] EMBL BM577081 [CCGCTGAAATCAAAACAAAGCAAAAAACCTCCACTCGTACGAGGAACACAAATGAAACGCTAATTTTAGCTAAGCTTACACCTTTTTGCAATAATTGTGACTAAATAGCAATAACACCATAAAGCGTTCAAAATTATCTTAAGTTAGCAACACACAAAAGATAAAACAAACCTCTCTACATTACACATCACATGGCTGTTGAACAAAGCGAAAGTGCCTAAAGATCATTCCAATACGACATTCTTCTAGAATTAACGAAACAAAGAGCAATTTAGTGTGGCCTTACCGAAATGTTCCGAACGCTAGGCGCCACCGTTCTGTTGCTGAAAATAAGCCTCACGATTGCGTATCGGCCTGTGTTCATCTACCATGGCATTCTTACTGGTGCGGATAGTATGGGGCATTTGGTCAATAGAATCCAGGAGGTTCACCCTGGCACGGTGGTGTACAATTTTGGACGTTTCGGCGGATGGGCCAGTCTGATAAATGCCTGGCATCAGGTGCAAGCGGCACACGACAACCTGAAATTAGTCTGCGATTTGCATCCGGACGAGGGCATCAACATGATCGGCTATTTCGCAGGGTGGTCTGCTGGGTCGGGCAGTGCTGCAGATCTATCCGGACCACTGGGGTGAAGACGTTCATCTCACTAAGCTCCCCGCAAGCGGGTC] consensusID : consensus_2599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGCCCACGCGTCCGCGTACGAGGAACACAAATGAAACGCTAATTTTAGCTAAGCTTACACCTTTTTGCAATAATTGTGACTAAATAGCAATAACACCATAAAGCGTTCAAAATTATCTTAAGTTAGCAACACACAAAAGATAAAACAAACCTCTCTACATTACACATCACATGGCTGTTGAACAAAGCGAAAGTGCCTAAAGATCATTCCAATACGACATTCTTCTAGAATTAACGAAACAAAGAGCAATTTAGTGTGGCCTTACCGAAATGTTCCGAACGCTAGGCGCCACCGTTCTGTTGCTGAAAATAAGCCTCACGATTGCGTATCGGCCTGTGTTCATCTACCATGGCATTCTTACTGGTGCGGATAGTATGGGGCATTTGGTCAATAGAATCCAGGAGGTTCACCCTGGCACGGTGGTGTACAATTTTGGACGTTTCGGCGGATGGGCCAGTCTGATAAATGCCTGGCATCAGGTGCAAGCGGCACACGACAACCTGAAATTAGTCTGCGATTTGCATCCGGACGAGGGCATCAACATGATCGGCTATTCGCAGGGTGGTCTGCTGGGTCGGGCAGTGCTGCAGATCTATCCGGACCACTGTGTGAAGACGTTCATCTCACTAAGCTCCCCGCAAGC] [+] EMBL BM603131 [CCGCCCACGCGTCCGCGTACGAGGAACACAAATGAAACGCTAATTTTAGCTAAGCTTACACCTTTTTGCAATAATTGTGACTAAATAGCAATAACACCATAAAGCGTTCAAAATTATCTTAAGTTAGCAACACACAAAAGATAAAACAAACCTCTCTACATTACACATCACATGGCTGTTGAACAAAGCGAAAGTGCCTAAAGATCATTCCAATACGACATTCTTCTAGAATTAACGAAACAAAGAGCAATTTAGTGTGGCCTTACCGAAATGTTCCGAACGCTAGGCGCCACCGTTCTGTTGCTGAAAATAAGCCTCACGATTGCGTATCGGCCTGTGTTCATCTACCATGGCATTCTTACTGGTGCGGATAGTATGGGGCATTTGGTCAATAGAATCCAGGAGGTTCACCCTGGCACGGTGGTGTACAATTTTGGACGTTTCGGCGGATGGGCCAGTCTGATAAATGCCTGGCATCAGGTGCAAGCGGCACACGACAACCTGAAATTAGTCTGCGATTTGCATCCGGACGAGGGCATCAACATGATCGGCTATTCGCAGGGTGGTCTGCTGGGTCGGGCAGTGCTGCAGATCTATCCGGACCACTGTGTGAAGACGTTCATCTCACTAAGCTCCCCGCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2599#0 CCGCTGAAATCAAAACAAAGCAAAAAACCTCCACTCGTACGAGGAACACAAATGAAACGC 60 consensus_2599#1 --------------------CCGCCCACGCGTCCGCGTACGAGGAACACAAATGAAACGC 40 * ** * ************************* consensus_2599#0 TAATTTTAGCTAAGCTTACACCTTTTTGCAATAATTGTGACTAAATAGCAATAACACCAT 120 consensus_2599#1 TAATTTTAGCTAAGCTTACACCTTTTTGCAATAATTGTGACTAAATAGCAATAACACCAT 100 ************************************************************ consensus_2599#0 AAAGCGTTCAAAATTATCTTAAGTTAGCAACACACAAAAGATAAAACAAACCTCTCTACA 180 consensus_2599#1 AAAGCGTTCAAAATTATCTTAAGTTAGCAACACACAAAAGATAAAACAAACCTCTCTACA 160 ************************************************************ consensus_2599#0 TTACACATCACATGGCTGTTGAACAAAGCGAAAGTGCCTAAAGATCATTCCAATACGACA 240 consensus_2599#1 TTACACATCACATGGCTGTTGAACAAAGCGAAAGTGCCTAAAGATCATTCCAATACGACA 220 ************************************************************ consensus_2599#0 TTCTTCTAGAATTAACGAAACAAAGAGCAATTTAGTGTGGCCTTACCGAAATGTTCCGAA 300 consensus_2599#1 TTCTTCTAGAATTAACGAAACAAAGAGCAATTTAGTGTGGCCTTACCGAAATGTTCCGAA 280 ************************************************************ consensus_2599#0 CGCTAGGCGCCACCGTTCTGTTGCTGAAAATAAGCCTCACGATTGCGTATCGGCCTGTGT 360 consensus_2599#1 CGCTAGGCGCCACCGTTCTGTTGCTGAAAATAAGCCTCACGATTGCGTATCGGCCTGTGT 340 ************************************************************ consensus_2599#0 TCATCTACCATGGCATTCTTACTGGTGCGGATAGTATGGGGCATTTGGTCAATAGAATCC 420 consensus_2599#1 TCATCTACCATGGCATTCTTACTGGTGCGGATAGTATGGGGCATTTGGTCAATAGAATCC 400 ************************************************************ consensus_2599#0 AGGAGGTTCACCCTGGCACGGTGGTGTACAATTTTGGACGTTTCGGCGGATGGGCCAGTC 480 consensus_2599#1 AGGAGGTTCACCCTGGCACGGTGGTGTACAATTTTGGACGTTTCGGCGGATGGGCCAGTC 460 ************************************************************ consensus_2599#0 TGATAAATGCCTGGCATCAGGTGCAAGCGGCACACGACAACCTGAAATTAGTCTGCGATT 540 consensus_2599#1 TGATAAATGCCTGGCATCAGGTGCAAGCGGCACACGACAACCTGAAATTAGTCTGCGATT 520 ************************************************************ consensus_2599#0 TGCATCCGGACGAGGGCATCAACATGATCGGCTATTTCGCAGGGTGGTCTGCTGGGTCGG 600 consensus_2599#1 TGCATCCGGACGAGGGCATCAACATGATCGGCTATT-CGCAGGGTGGTCTGCTGGGTCGG 579 ************************************ *********************** consensus_2599#0 GCAGTGCTGCAGATCTATCCGGACCACTGGGGTGAAGACGTTCATCTCACTAAGCTCCCC 660 consensus_2599#1 GCAGTGCTGCAGATCTATCCGGACCACTGTG-TGAAGACGTTCATCTCACTAAGCTCCCC 638 ***************************** * **************************** consensus_2599#0 GCAAGCGGGTC 671 consensus_2599#1 GCAAGC----- 644 ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||