cluster # 2608

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Anopheles gambiae
cluster # 2608 cluster # 2608 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2608#0 length = 948 sequences # 1

consensus_2608#1 length = 582 sequences # 1

consensusID : consensus_2608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 948
fasta sequence

                              [AATTCCCCGAGGTTAAACACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGTCACTACTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTCAACGTAAAACTAAGTATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGCCGCGCAACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCACGTATGCCTATCTGCGCTGGGTACCGGCACTAGCGGCCGGCAAGATATCCGTGCGTCGCGCAGCGAGAGAACCAAATCTAAATCGAACTAACAGCACCAGCATAAACAGCCGCTAATAAGTAAGCTATTAAGCGTCGTTTTACTAAACAGCATCGAAAGGCCTGAAACACTGCTAGGGAAAACGCTTTTTCCCGGTGGCCATGCACTATGCATTTTTTCATTCCATCACATATCAATTAACGGTTAGTAGAGGAGTAGATGATAAAAAGCGCTCAAACAGATTACCGGCAAAGCTAGCAGCCACCAGCAATCAACAACTACTACACAAACAACTACCTGTATCCTACAATTTGCCTCGCACAAACTTACATCACCCTACAACATAAAAACCTGCTCGTGTGGATCCTCCTAAANTTCTNAAGAGGCGGACGTGGGTCGAATCATGGGGTANTGTACNCCCTAACAATAATTCCAAAAATGCCTGGGTGGTTCAAACAAACACACATCGACGCACNACACCACANGATTGTGGGGCGAGNCTATACCCTTGAGGAGGGTACATTCACCNTGGCCGGACCGGCTGAAGGTNCGACGGGAAACCTGGTTACCACTATCGCATGACATCCGTTGCNAGGGATATAAAAGCGCGTGCNCACGGACGANGAGGACCGTAGTACGGGTGAACGAAAATANCACCGTTTTACCATANTATT]

[+] EMBL AL933289             [AATTCCCCGAGGTTAAACACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGTCACTACTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTCAACGTAAAACTAAGTATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGCCGCGCAACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCACGTATGCCTATCTGCGCTGGGTACCGGCACTAGCGGCCGGCAAGATATCCGTGCGTCGCGCAGCGAGAGAACCAAATCTAAATCGAACTAACAGCACCAGCATAAACAGCCGCTAATAAGTAAGCTATTAAGCGTCGTTTTACTAAACAGCATCGAAAGGCCTGAAACACTGCTAGGGAAAACGCTTTTTCCCGGTGGCCATGCACTATGCATTTTTTCATTCCATCACATATCAATTAACGGTTAGTAGAGGAGTAGATGATAAAAAGCGCTCAAACAGATTACCGGCAAAGCTAGCAGCCACCAGCAATCAACAACTACTACACAAACAACTACCTGTATCCTACAATTTGCCTCGCACAAACTTACATCACCCTACAACATAAAAACCTGCTCGTGTGGATCCTCCTAAANTTCTNAAGAGGCGGACGTGGGTCGAATCATGGGGTANTGTACNCCCTAACAATAATTCCAAAAATGCCTGGGTGGTTCAAACAAACACACATCGACGCACNACACCACANGATTGTGGGGCGAGNCTATACCCTTGAGGAGGGTACATTCACCNTGGCCGGACCGGCTGAAGGTNCGACGGGAAACCTGGTTACCACTATCGCATGACATCCGTTGCNAGGGATATAAAAGCGCGTGCNCACGGACGANGAGGACCGTAGTACGGGTGAACGAAAATANCACCGTTTTACCATANTATT]




>consensus_2608#0
AATTCCCCGAGGTTAAACACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGTCACTA
CTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTCAACGTAAAACTAAGT
ATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGCCGCGC
AACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCACGTAT
GCCTATCTGCGCTGGGTACCGGCACTAGCGGCCGGCAAGATATCCGTGCGTCGCGCAGCG
AGAGAACCAAATCTAAATCGAACTAACAGCACCAGCATAAACAGCCGCTAATAAGTAAGC
TATTAAGCGTCGTTTTACTAAACAGCATCGAAAGGCCTGAAACACTGCTAGGGAAAACGC
TTTTTCCCGGTGGCCATGCACTATGCATTTTTTCATTCCATCACATATCAATTAACGGTT
AGTAGAGGAGTAGATGATAAAAAGCGCTCAAACAGATTACCGGCAAAGCTAGCAGCCACC
AGCAATCAACAACTACTACACAAACAACTACCTGTATCCTACAATTTGCCTCGCACAAAC
TTACATCACCCTACAACATAAAAACCTGCTCGTGTGGATCCTCCTAAANTTCTNAAGAGG
CGGACGTGGGTCGAATCATGGGGTANTGTACNCCCTAACAATAATTCCAAAAATGCCTGG
GTGGTTCAAACAAACACACATCGACGCACNACACCACANGATTGTGGGGCGAGNCTATAC
CCTTGAGGAGGGTACATTCACCNTGGCCGGACCGGCTGAAGGTNCGACGGGAAACCTGGT
TACCACTATCGCATGACATCCGTTGCNAGGGATATAAAAGCGCGTGCNCACGGACGANGA
GGACCGTAGTACGGGTGAACGAAAATANCACCGTTTTACCATANTATT

consensusID : consensus_2608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [TTGCCAGAGTGTCGCTGCGCTTCGTCTACTACAGCACGCTGTTTTTCATATCGATTTCCCGCATGTACTTCGGATGCCATTTCCTTCATCAGTGCATCTTCGGAATTCTGCTGGGAATCCTTATGAGCAAGGTGTGTCTGTCCCATCGGCTTGAAAAATACATTGCGAAGCAGTCGGGCAAGCGAAGAGTGGGATTTGTAGTGCTGATATGCCTGGCGATGCTTTCCCTATACTGGGCTCAAAAGCTGTTGGGGATCGATCCGCAGTGGGCGGTGAAGATGGCTTTCAAGTGGTGTGAGGATCCGTTCTACTTGAAGCCAACCACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGTCACTACTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTAAACGTAAAACTAAGTATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGCCGCGCAACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCACGTATGCCTATCTGCGCTGGGTACCGGCACTAGCGGGCGGCC]

[+] EMBL BX617791             [TTGCCAGAGTGTCGCTGCGCTTCGTCTACTACAGCACGCTGTTTTTCATATCGATTTCCCGCATGTACTTCGGATGCCATTTCCTTCATCAGTGCATCTTCGGAATTCTGCTGGGAATCCTTATGAGCAAGGTGTGTCTGTCCCATCGGCTTGAAAAATACATTGCGAAGCAGTCGGGCAAGCGAAGAGTGGGATTTGTAGTGCTGATATGCCTGGCGATGCTTTCCCTATACTGGGCTCAAAAGCTGTTGGGGATCGATCCGCAGTGGGCGGTGAAGATGGCTTTCAAGTGGTGTGAGGATCCGTTCTACTTGAAGCCAACCACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGTCACTACTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTAAACGTAAAACTAAGTATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGCCGCGCAACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCACGTATGCCTATCTGCGCTGGGTACCGGCACTAGCGGGCGGCC]




>consensus_2608#1
TTGCCAGAGTGTCGCTGCGCTTCGTCTACTACAGCACGCTGTTTTTCATATCGATTTCCC
GCATGTACTTCGGATGCCATTTCCTTCATCAGTGCATCTTCGGAATTCTGCTGGGAATCC
TTATGAGCAAGGTGTGTCTGTCCCATCGGCTTGAAAAATACATTGCGAAGCAGTCGGGCA
AGCGAAGAGTGGGATTTGTAGTGCTGATATGCCTGGCGATGCTTTCCCTATACTGGGCTC
AAAAGCTGTTGGGGATCGATCCGCAGTGGGCGGTGAAGATGGCTTTCAAGTGGTGTGAGG
ATCCGTTCTACTTGAAGCCAACCACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGT
CACTACTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTAAACGTAAAAC
TAAGTATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGC
CGCGCAACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCA
CGTATGCCTATCTGCGCTGGGTACCGGCACTAGCGGGCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2608#0      AATTCCCCGAGGTTAAACACAACACTAGTGTTTAGCGCAATTCGCCTTACTGGGTCACTA 60
consensus_2608#1      ------------------------------------------------------------
                                                                                  

consensus_2608#0      CTGGCACTGGCGGTGGTAGGACCTATTCAAAAAGCTAAACCGCTCAACGTAAAACTAAGT 120
consensus_2608#1      ------------------------------------------------------------
                                                                                  

consensus_2608#0      ATTCCTATGGTAATGGCAATGATGGCGTTCGAATGGATAGCATTGGACTTTACGCCGCGC 180
consensus_2608#1      ------------------------------------------------------------
                                                                                  

consensus_2608#0      AACTTCGGTGTGGTTGTGTACTTTTTATACAGCTTCCTGCTTTACTTCCTATTCACGTAT 240
consensus_2608#1      -TTGCCAGAGTGTCGCTGCGCTTCGTCTACTACAGCACGCTGTTTTTCATATCGAT-TTC 58
                           * * ***    **  ***  * ***  *  *  *** *  *** ***  *  *  

consensus_2608#0      GCCTATCTGCGCTGGGTACCGGCACTAGCGGCCGGCAAGATATCCGTGCGTCGCGCAGCG 300
consensus_2608#1      CCGCATGTACTTCGGATGCCATTTCCT----TCATCAGTGCATC--TTCGGAATTCTGCT 112
                       *  ** * *   ** * **    *       *  **    ***  * **     * ** 

consensus_2608#0      AGAGAACCAAATCTAAATCGAACTAACAGCACCAGCATAAACAGCCGCTAATAAGTAAGC 360
consensus_2608#1      GGGAATCCTTAT-------GAGCAAGGTGTGTCTGTCCCATCGGC--TTGAAAAATACAT 163
                       *  * **  **       ** * *   *   * *    * * **   * * ** **   

consensus_2608#0      TATTAAGC-GTCGTTTTACTAAACAGCATCGAAAGGCCTGAAACACTGCTAGGGAAAACG 419
consensus_2608#1      TGCGAAGCAGTCGGGCAAGCGAAGAGT-----GGGATTTGTAGTGCTGATATGCCTGGCG 218
                      *   **** ****    *   ** **        *   ** *   *** ** *     **

consensus_2608#0      CTTTTTCCCGGTGGCCATGCACTATGCATTTTTTCATTCCATCACATATCAATTAACGGT 479
consensus_2608#1      ATGCTTTCCC-------TATACTGGGC----TCAAAAGCTGTTGGGGATCGATCCGCAGT 267
                       *  ** **        *  ***  **    *   *  *  *     *** **   * **

consensus_2608#0      TAGTAGAGGAGTAGATGATAAAAAGCGCTCAAACAGATTACCGGCAAAGCTAGCAGCCAC 539
consensus_2608#1      GGGCGGTGAAG----------ATGGCTTTCAAGTGGT------GTGAGGATCCGTTCTAC 311
                        *  * * **          *  **  ****   *       *  * * *     * **

consensus_2608#0      CAGCAATCAACAACTACTACACAAACAACTACCTGTATCCTACAATTTGCCTCGCACAAA 599
consensus_2608#1      TTGAAGCCAAC---CACAACACTAG--------TGTTTAGCGCAATTCGCCTTAC----- 355
                        * *  ****    ** **** *         *** *    ***** ****  *     

consensus_2608#0      CTTACATCACCCTACAACATAAAAACCTGCTCGTGTGGATCCTCCTAAANTTCTNAAGAG 659
consensus_2608#1      --TGGGTCACTAC-TGGCACTGG----CGGTGGTA-GGACCTATTCAAAAAGCTAAACCG 407
                        *   ****       **         * * **  *** *     ***   ** **  *

consensus_2608#0      GCGGACGTGGGTCGAATCATGGGGTANTGTACNCCCTAACAATAATTCCAAAAATGCCTG 719
consensus_2608#1      CTAAACGTAAAACTAA------------GTATTCCT--ATGGTAATGGCAATGATGGC-- 451
                          ****    * **            ***  **   *   ****  ***  *** *  

consensus_2608#0      GGTGGTTCAAACAAACACACATCGACGCACNACACCACANGATTGTGGGGCGAGNCTATA 779
consensus_2608#1      ----GTTCGAATGGATA-GCATTGG-ACTTTACGCCGCGCAACTTCGGTGTGGTTGTGTA 505
                          **** **   * *  *** *   *   ** ** *   * *  ** * *    * **

consensus_2608#0      CCCTTGAGGAGGGTACATTCACCNTGGCCGGACCGGCTGAAGGTNCGACGGGAAACCTGG 839
consensus_2608#1      CTTTTTATACAGCTTCCTGCTTTACTTCCTATTCA--CGTATGCCTATCTGCG---CTGG 560
                      *  ** *    * * * * *       **    *    * * *     * *     ****

consensus_2608#0      TTACCACTATCGCATGACATCCGTTGCNAGGGATATAAAAGCGCGTGCNCACGGACGANG 899
consensus_2608#1      GTACCGGCACTAGCGGGCGGCC-------------------------------------- 582
                       ****   *      * *  **                                      

consensus_2608#0      AGGACCGTAGTACGGGTGAACGAAAATANCACCGTTTTACCATANTATT 948
consensus_2608#1      -------------------------------------------------