These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACACCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAGCATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGGCTCTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAACACATTCTTACTACGTTAAGGTTATAAAGTTAAAAACACCACAAATACAGCGAAACGTAACCGAAAAACGGCCATAGAGAAAGGCACCCAATGATGGGGAGCAGGAGGGGCAGAAAACACTGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGCATGAGTGTAACGTATGTATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTTAGTANAACCTACNCTANATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACACGAAAACAACNCTAAGCAAGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAANAACCNGGGCATGTTGNCGGTCGCCNGCTTCATTCCCTT] [+] EMBL AL934599 [ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACACCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAGCATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGGCTCTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAACACATTCTTACTACGTTAAGGTTATAAAGTTAAAAACACCACAAATACAGCGAAACGTAACCGAAAAACGGCCATAGAGAAAGGCACCCAATGATGGGGAGCAGGAGGGGCAGAAAACACTGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGCATGAGTGTAACGTATGTATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTTAGTANAACCTACNCTANATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACACGAAAACAACNCTAAGCAAGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAANAACCNGGGCATGTTGNCGGTCGCCNGCTTCATTCCCTT] consensusID : consensus_2615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TATCGTGTACACACCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTGTGTGTAATGTGAGCATGTGAGTTAAAGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGCGTGCATGTGCATGGGTTCTTCCTTACCTAACCCCCTTTCCGGTAAAACTTGTTAAAAACATTCTTACTACTTAAGTTATAAAGTTAAAAACACCACGAAAATACACGAAACTAACCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCGAATAATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAAACACGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCTGCTGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAGAAGAAAGGCGTAACTTTATAAACTAACTAATGTAAAAAGGGGAAAAGGGGAAGCGAACAGCTCTATACAAAACAAATAAGAAGTAAACACAAAGCAAAAACCAAACAATTGTGACACCATTTCTATTATTCACA] [+] EMBL BX627799 [TATCGTGTACACACCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTGTGTGTAATGTGAGCATGTGAGTTAAAGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGCGTGCATGTGCATGGGTTCTTCCTTACCTAACCCCCTTTCCGGTAAAACTTGTTAAAAACATTCTTACTACTTAAGTTATAAAGTTAAAAACACCACGAAAATACACGAAACTAACCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCGAATAATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAAACACGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCTGCTGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAGAAGAAAGGCGTAACTTTATAAACTAACTAATGTAAAAAGGGGAAAAGGGGAAGCGAACAGCTCTATACAAAACAAATAAGAAGTAAACACAAAGCAAAAACCAAACAATTGTGACACCATTTCTATTATTCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2615#0 ACCGTTTATTCTNGATAATAGTGTATATAGAAGCGTAAATTCTATTGTATCGTGTACACA 60 consensus_2615#1 -----------------------------------------------TATCGTGTACACA 13 ************* consensus_2615#0 CCACATTCATTGACCCTGAAAGACGCCCTTTGCGCACGCATGCTGTGTGTGTAATGTGAG 120 consensus_2615#1 CCACATTCATTGACCCCGAAAGACGCCCTTTGCGCGCGCTTGCTGTGTGTGTAATGTGAG 73 **************** ****************** *** ******************** consensus_2615#0 CATGTGAGTTGAAACGAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATG--- 177 consensus_2615#1 CATGTGAGTTAAA--GAAGCGATTTGTGTACATACAATATGTGCGAAGGAGGCCATGCGT 131 ********** ** ****************************************** consensus_2615#0 ------------GCTCTTCTTTACCGTAACCCCCCCGTTTCCGGTAAAACTTGTTNAAAC 225 consensus_2615#1 GCATGTGCATGGGTTCTTCCTTACC-TAACCCCC---TTTCCGGTAAAACTTGTTAAAA- 186 * ***** ***** ******** ****************** *** consensus_2615#0 ACATTCTTACTACGTTAAGGTTATAAAGTTAAAAACACCACAAATACA-GCGAAACGTAA 284 consensus_2615#1 ACATTCTTACTACTT--AAGTTATAAAGTTAAAAACACCACGAAAATACACGAAAC-TAA 243 ************* * * ********************** ** * * ****** *** consensus_2615#0 CCGAAAAACGGCC-ATAGAGAAAGGCACCCAATGATG----------------------- 320 consensus_2615#1 CCGAAAAACGGCCCATAGAAAAAGGTACCCAATGATGCTGGCGGATCATCCCAGTCGAAT 303 ************* ***** ***** *********** consensus_2615#0 -----------------------GGG-------AGCAGGA-------GGGGCAGAAAACA 343 consensus_2615#1 AATAAAACGCCTCATTGCATCCTGGGTTTTTGTGGTGGGGTTGTATGGGGGGAGAAAACA 363 *** * ** **** ******** consensus_2615#0 CTGGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAACACCTACGTTTGCTGC 403 consensus_2615#1 C-GGGGCATTCAGCTTAAGAGTAACTTATTAAACACAGCGAAAAAACCTACGTTTGCTGC 422 * ****************************************** *************** consensus_2615#0 ATGAGTGTAACGTATGTATATGTAGACGAGCAGGNAAGCAAGAACAGGCGTAACCGTCTT 463 consensus_2615#1 -TGAGTGTAACGTATGTATATGTAGACGAGCAGGCAAG-AAGAA-AGGCGTAACTTT--- 476 ********************************* *** ***** ********* * consensus_2615#0 AGTANAACCTACNCTANATGTCCCACACGGGGAACAAGGGGAAGCAAACCAGCTGTACAC 523 consensus_2615#1 ---ATAAACTAACTAATGT-----AAAAAGGGGAAAAGGGGAAGCGAAC-AGCTCTATAC 527 * ** *** * * * * *** * ********** *** **** ** ** consensus_2615#0 GAAAACAACNCTAAGCAAGTAAACACAAAAGCAGAACACAAGAAGACNNCAAGAACACAA 583 consensus_2615#1 -AAAACAAAT---AAGAAGTAAACACAAA-GCAAAA-ACCAAACAATTGTGACACCATTT 581 ******* * ************* *** ** ** * * * * * ** consensus_2615#0 NAACCNGGGCATGTTGNCGGTCGCCNGCTTCATTCCCTT 622 consensus_2615#1 CTATTATT-CACA-------------------------- 593 * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||