These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [AGGTCGGATCTTGACCGAGTCCTTTCAGCCGACTGTACCATGCAGCTGTGCGCCGTAGTTTCCTTCCTTGTGGTGGGACTGATTGCCAGTGCCACTGCCATTGACGATCGCAACTGGCACCTGGTTCCCGATGGCAACGGTAGGCTGCATCTCGTCAACACCAACCCGTACGATCTGCCGGAAACGGACGCCGGCACCGCCGCACCACGGTTCGTGCCCCAGCAGGACATGATTTTCCGTCTGTTCACGCGGGCCAATCCGACGCAACCGCAGATACTGCAGCTCAACAATGCCGCCTCCATTACCGGCTCGAACTTCAACCCGGCCCACCCGACGCGCTTCACCATTCACGGCTGGAACAACGACGGGTCGCACTTCATGAACCCGCTGATCCGGGATGCGTTCTTCGAGCGGGGCGACTTTAACGTGATCACCGTCGACTGGGGCGTGGGTGCGATCAACCCGAACTACATCGCGTCCCGCAACTTGGTCGGACCGGTGGGCAACACCGTCTCGCTGCTGATCGATCAGCTGATCGCGACCGCCGGCGCCAACCCGGACAACATCTACATCATCGGCTACAGCCTGGGTGCGCACGCGGCCGCTAACGCCGGCAAGGCACAGAACGGGCGCATCAACTTCTACCCGAACGGTGGNCACACGCAGCCGGGCTGCGGTACGGACCTCGGGGGCAGCTGTGCTCACGATCGTGCGCCCACGTTCTACGCCGAGTCGGTCCGCGCCNGCACGCCGTTCCGTGCGATGCGCTGCGCCGACCATGGGCANATACTGGCGGGCAGCTGTACCTCGTCCGGACCGGACGCTAACATGGGCGGGC] [+] EMBL BX621355 [AGGTCGGATCTTGACCGAGTCCTTTCAGCCGACTGTACCATGCAGCTGTGCGCCGTAGTTTCCTTCCTTGTGGTGGGACTGATTGCCAGTGCCACTGCCATTGACGATCGCAACTGGCACCTGGTTCCCGATGGCAACGGTAGGCTGCATCTCGTCAACACCAACCCGTACGATCTGCCGGAAACGGACGCCGGCACCGCCGCACCACGGTTCGTGCCCCAGCAGGACATGATTTTCCGTCTGTTCACGCGGGCCAATCCGACGCAACCGCAGATACTGCAGCTCAACAATGCCGCCTCCATTACCGGCTCGAACTTCAACCCGGCCCACCCGACGCGCTTCACCATTCACGGCTGGAACAACGACGGGTCGCACTTCATGAACCCGCTGATCCGGGATGCGTTCTTCGAGCGGGGCGACTTTAACGTGATCACCGTCGACTGGGGCGTGGGTGCGATCAACCCGAACTACATCGCGTCCCGCAACTTGGTCGGACCGGTGGGCAACACCGTCTCGCTGCTGATCGATCAGCTGATCGCGACCGCCGGCGCCAACCCGGACAACATCTACATCATCGGCTACAGCCTGGGTGCGCACGCGGCCGCTAACGCCGGCAAGGCACAGAACGGGCGCATCAACTTCTACCCGAACGGTGGNCACACGCAGCCGGGCTGCGGTACGGACCTCGGGGGCAGCTGTGCTCACGATCGTGCGCCCACGTTCTACGCCGAGTCGGTCCGCGCCNGCACGCCGTTCCGTGCGATGCGCTGCGCCGACCATGGGCANATACTGGCGGGCAGCTGTACCTCGTCCGGACCGGACGCTAACATGGGCGGGC] consensusID : consensus_2671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CTGTGCGCCGTAGTTTCCTTCCTTGTGGTGGGACTGATTGCCAGTGCCACTGCCATTGACGATCGCAACTGGCACCTGGTTCCCGATGGCAACGGTAGGCTGCATCTCGTCAACACCAACCCGTACGATCTGCCGGAAACGGACGCCGGCACCGCCGCACCACGGTTCGTGCCCCAGCAGGACATGATTTTCCGTCTGTTCACGCGGGCCAATCCGACGCAACCGCAGATACTGCAGCTCAACAATGCCGCCTCCATTACCGGCTCGAACTTCAACCCGGCCCACCCGACGCGCTTCACCATTCACGGCTGGAACAACGACGGGTCGCACTTCATGAACCCGCTGATCCGGGATGCGTTCTTCGAGCGGGGCGACTTTAACGTGATCACCGTCGACTGGGGCGTGGGTGCGATCAACCCGAACTACATCGCGTCCCGCAACTTGGTCGGACCGGTGGGCAACACCGTCTCGCTGCTGATCGATCAGCTGATCGCGACCGCCGGCGCCAACCCGGACAACATCTACATCATCGGCTACAGCCTGGGTGCGCACGCGGCCGCTAACGCCGGCAAGGCACAGAACGGGCGCATCAACACGATCATTGCGCTGGATCCGGCCGGGCCGCTGTTTGCGTTCGG] [+] EMBL BX628662 [CTGTGCGCCGTAGTTTCCTTCCTTGTGGTGGGACTGATTGCCAGTGCCACTGCCATTGACGATCGCAACTGGCACCTGGTTCCCGATGGCAACGGTAGGCTGCATCTCGTCAACACCAACCCGTACGATCTGCCGGAAACGGACGCCGGCACCGCCGCACCACGGTTCGTGCCCCAGCAGGACATGATTTTCCGTCTGTTCACGCGGGCCAATCCGACGCAACCGCAGATACTGCAGCTCAACAATGCCGCCTCCATTACCGGCTCGAACTTCAACCCGGCCCACCCGACGCGCTTCACCATTCACGGCTGGAACAACGACGGGTCGCACTTCATGAACCCGCTGATCCGGGATGCGTTCTTCGAGCGGGGCGACTTTAACGTGATCACCGTCGACTGGGGCGTGGGTGCGATCAACCCGAACTACATCGCGTCCCGCAACTTGGTCGGACCGGTGGGCAACACCGTCTCGCTGCTGATCGATCAGCTGATCGCGACCGCCGGCGCCAACCCGGACAACATCTACATCATCGGCTACAGCCTGGGTGCGCACGCGGCCGCTAACGCCGGCAAGGCACAGAACGGGCGCATCAACACGATCATTGCGCTGGATCCGGCCGGGCCGCTGTTTGCGTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2671#0 AGGTCGGATCTTGACCGAGTCCTTTCAGCCGACTGTACCATGCAGCTGTGCGCCGTAGTT 60 consensus_2671#1 ---------------------------------------------CTGTGCGCCGTAGTT 15 *************** consensus_2671#0 TCCTTCCTTGTGGTGGGACTGATTGCCAGTGCCACTGCCATTGACGATCGCAACTGGCAC 120 consensus_2671#1 TCCTTCCTTGTGGTGGGACTGATTGCCAGTGCCACTGCCATTGACGATCGCAACTGGCAC 75 ************************************************************ consensus_2671#0 CTGGTTCCCGATGGCAACGGTAGGCTGCATCTCGTCAACACCAACCCGTACGATCTGCCG 180 consensus_2671#1 CTGGTTCCCGATGGCAACGGTAGGCTGCATCTCGTCAACACCAACCCGTACGATCTGCCG 135 ************************************************************ consensus_2671#0 GAAACGGACGCCGGCACCGCCGCACCACGGTTCGTGCCCCAGCAGGACATGATTTTCCGT 240 consensus_2671#1 GAAACGGACGCCGGCACCGCCGCACCACGGTTCGTGCCCCAGCAGGACATGATTTTCCGT 195 ************************************************************ consensus_2671#0 CTGTTCACGCGGGCCAATCCGACGCAACCGCAGATACTGCAGCTCAACAATGCCGCCTCC 300 consensus_2671#1 CTGTTCACGCGGGCCAATCCGACGCAACCGCAGATACTGCAGCTCAACAATGCCGCCTCC 255 ************************************************************ consensus_2671#0 ATTACCGGCTCGAACTTCAACCCGGCCCACCCGACGCGCTTCACCATTCACGGCTGGAAC 360 consensus_2671#1 ATTACCGGCTCGAACTTCAACCCGGCCCACCCGACGCGCTTCACCATTCACGGCTGGAAC 315 ************************************************************ consensus_2671#0 AACGACGGGTCGCACTTCATGAACCCGCTGATCCGGGATGCGTTCTTCGAGCGGGGCGAC 420 consensus_2671#1 AACGACGGGTCGCACTTCATGAACCCGCTGATCCGGGATGCGTTCTTCGAGCGGGGCGAC 375 ************************************************************ consensus_2671#0 TTTAACGTGATCACCGTCGACTGGGGCGTGGGTGCGATCAACCCGAACTACATCGCGTCC 480 consensus_2671#1 TTTAACGTGATCACCGTCGACTGGGGCGTGGGTGCGATCAACCCGAACTACATCGCGTCC 435 ************************************************************ consensus_2671#0 CGCAACTTGGTCGGACCGGTGGGCAACACCGTCTCGCTGCTGATCGATCAGCTGATCGCG 540 consensus_2671#1 CGCAACTTGGTCGGACCGGTGGGCAACACCGTCTCGCTGCTGATCGATCAGCTGATCGCG 495 ************************************************************ consensus_2671#0 ACCGCCGGCGCCAACCCGGACAACATCTACATCATCGGCTACAGCCTGGGTGCGCACGCG 600 consensus_2671#1 ACCGCCGGCGCCAACCCGGACAACATCTACATCATCGGCTACAGCCTGGGTGCGCACGCG 555 ************************************************************ consensus_2671#0 GCCGCTAACGCCGGCAAGGCACAGAACGGGCGCATCAACTTCTACCCGAACGGTGGNCAC 660 consensus_2671#1 GCCGCTAACGCCGGCAAGGCACAGAACGGGCGCATCAACA-CGATCATTGCGCTGGATCC 614 *************************************** * * * ** *** * consensus_2671#0 ACGCAGCCGGGCTGCGGTACGGACCTCGGGGGCAGCTGTGCTCACGATCGTGCGCCCACG 720 consensus_2671#1 G----GCCGGGCCGCTGTTTGCGT-TCGG------------------------------- 638 ******* ** ** * **** consensus_2671#0 TTCTACGCCGAGTCGGTCCGCGCCNGCACGCCGTTCCGTGCGATGCGCTGCGCCGACCAT 780 consensus_2671#1 ------------------------------------------------------------ consensus_2671#0 GGGCANATACTGGCGGGCAGCTGTACCTCGTCCGGACCGGACGCTAACATGGGCGGGC 838 consensus_2671#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||