These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGTNCCATACATCTGCGCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCATCAGGCNGATTTTCACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCGGTCTGCAACC] [+] EMBL BX619925 [GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGTNCCATACATCTGCGCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCATCAGGCNGATTTTCACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCGGTCTGCAACC] consensusID : consensus_2689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCGTGTGCTAATACGATCCGTTCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA] [+] EMBL BM638477 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCATCATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTGTACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATCAATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAACGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGAGGGAGCAGCGTGGATCCGTGTGCTAATACGATCCGTTCCCCAGACCTAAGTCCTAGTCCTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2689#0 -------------GCAAAACGGACGTATCGGTGGCGTCGGTCACATCAACAGCTAGTCAT 47 consensus_2689#1 CCGCGGACGCGTGGGCGGACGCGTGGGTCGGTGGCGTCGGTCACATCAACAGCTAGTCAT 60 * *** * ********************************* consensus_2689#0 CATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTG 107 consensus_2689#1 CATCTCTATCACCATCCGCAGCATCCACTGTCACCACACCACCAGTATCAGGGATCACTG 120 ************************************************************ consensus_2689#0 TACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATC 167 consensus_2689#1 TACTTGGGGAAGGAACCATTAGCCGTTGGCTCCAAATCTCCGATAATGGCGGAATCCATC 180 ************************************************************ consensus_2689#0 AATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAA 227 consensus_2689#1 AATCACGCACATTATCAGGGCCAGCTTGGATCTACTCGGTACGGATATGGCGCCAAGAAA 240 ************************************************************ consensus_2689#0 CGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGA 287 consensus_2689#1 CGGTCCCCTAGCTACGGTGGAGGGAGTGGCACTGCAGCATCTCCTGGGGCTACCTCCGGA 300 ************************************************************ consensus_2689#0 GGGAGCAGCGTGGATCCCGTGTGCTAATACGATCCGTTCCCCCAGACCTAAGTCCTAGTC 347 consensus_2689#1 GGGAGCAGCGTGGATCC-GTGTGCTAATACGATCCGTTCCCC-AGACCTAAGTCCTAGTC 358 ***************** ************************ ***************** consensus_2689#0 CTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCANNAGCAGT 407 consensus_2689#1 CTGAGCATCATCATCATCAGCAGCCGCAGCATCAGCATCAGCACCAACAGCA-------- 410 **************************************************** consensus_2689#0 NCCATACATCTGCGCAACATTCACATCATGGGCTTCATCATACGCNNGGTNCTGCTTCAT 467 consensus_2689#1 ------------------------------------------------------------ consensus_2689#0 CAGGCNGATTTTCACGCTACCGACAGCCACCGTACGGTGGCAGCCCCAAGTANCTACTCG 527 consensus_2689#1 ------------------------------------------------------------ consensus_2689#0 GTCTGCAACC 537 consensus_2689#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||