These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGGAACATTACGGAGGTGCCGGGCAGCGAGGTGCCGGACTCGTCCAGCTTCCACAGCAACGAAAGCAATGAATCGCACCCGAAAGCTAGTCTTCTTCCGCCGATTCTAGGACCGGTAGATTCGACGCGAGACATCGAAACGCTGAACGAGGATAACGAGTCGGAGTACGTGGACGACTCGGAGTGTGATCAGAGTGAGCAGCCGCTTTCGTTGGGCTTCGAGCAGAACTCCTCCATATCCTGCCTGAACCCGCTCGACAGTGGCAGTGAAGACTATAGATTTAACACAGCTGATAGTTATCTGCGTCATCCGAACAGCTACTTGCCGAAGTATAACATACAGAGCGAAACGGAGGGCGAAAATGTGCCACTGACGGGCCGGAAGCCGCTGAACGGGCTCGAGATCGGCCGGCACCAGCTGGTCGAGTCGGACGACGACGACGTCGAGTCGTACGGCTTTCCCCAAACGCGCCGGAACCGTCGCGAACCCAGTGATATCGATTTAGTTTTAAAAACTGACGAAGGCAGCTCTCTGCTAAGCCATTCCCGCACGCTGAACAGCTCCAATCACTCGAACAGTGATCTCTCCACCCAGCTGTGCGAGATCGATGACTCCGAGTACGAGGAGAGCCATCATCAGCAGCAGCAACCCCCGCACCACCATCCCCATCATCATCATC] [+] EMBL BM592632 [CCGGAACATTACGGAGGTGCCGGGCAGCGAGGTGCCGGACTCGTCCAGCTTCCACAGCAACGAAAGCAATGAATCGCACCCGAAAGCTAGTCTTCTTCCGCCGATTCTAGGACCGGTAGATTCGACGCGAGACATCGAAACGCTGAACGAGGATAACGAGTCGGAGTACGTGGACGACTCGGAGTGTGATCAGAGTGAGCAGCCGCTTTCGTTGGGCTTCGAGCAGAACTCCTCCATATCCTGCCTGAACCCGCTCGACAGTGGCAGTGAAGACTATAGATTTAACACAGCTGATAGTTATCTGCGTCATCCGAACAGCTACTTGCCGAAGTATAACATACAGAGCGAAACGGAGGGCGAAAATGTGCCACTGACGGGCCGGAAGCCGCTGAACGGGCTCGAGATCGGCCGGCACCAGCTGGTCGAGTCGGACGACGACGACGTCGAGTCGTACGGCTTTCCCCAAACGCGCCGGAACCGTCGCGAACCCAGTGATATCGATTTAGTTTTAAAAACTGACGAAGGCAGCTCTCTGCTAAGCCATTCCCGCACGCTGAACAGCTCCAATCACTCGAACAGTGATCTCTCCACCCAGCTGTGCGAGATCGATGACTCCGAGTACGAGGAGAGCCATCATCAGCAGCAGCAACCCCCGCACCACCATCCCCATCATCATCATC] consensusID : consensus_2690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTAACATACAGAGCGAAACGGAGGGCGAAAATGTGCCACTGACGGGCCGGAAGCCGCTGAACGGGCTCGAGATCGGCCGGCACCAGCTGGTCGAGTCGGACGACGACGACGTCGAGTCGTACGGCTTTCCCCAAACGCGCCGGAACCGTCGCGAACCCAGTGATATCGATTTAGTTTTAAAAACTGACGAAGGCAGCTCTCTGCTAAGCCATTCCCGCACGCTGAACAGCTCCAATCACTCGAACAGTGATCTCTCCACCCAGCTGTGCGAGATCGATGACTCCGAGTACGAGGAGAGCCATCATCAGCAGCAGCAACCCCCGCACCACCATCCCCATCATCATCATCATCACCAGCATCACCATCATCAGCTCCTGCCACCGCAGGCGAACGTGTCGGCCGGTGGTTCGTCCGGAGGTGGCAGTGTCGCTTCGACCAGCGCCGGCAGTACCGGTGCGACCGCCAAACCGAAGCAACAGAAGGTCAAGTGGAGCAACGTCGTCCAGCAGACGGAAGTTTGACAGCGGCAGCTAATCGATGACAGCAGCAGCAGCAGCAGCACCCGCCCACAGGTGGCGCTAACAGATAAGACTTATTTTACTACTTCTATTAC] [+] EMBL BM584959 [CCGCCCACGCGTCCGCCCACGCGTCCGTAACATACAGAGCGAAACGGAGGGCGAAAATGTGCCACTGACGGGCCGGAAGCCGCTGAACGGGCTCGAGATCGGCCGGCACCAGCTGGTCGAGTCGGACGACGACGACGTCGAGTCGTACGGCTTTCCCCAAACGCGCCGGAACCGTCGCGAACCCAGTGATATCGATTTAGTTTTAAAAACTGACGAAGGCAGCTCTCTGCTAAGCCATTCCCGCACGCTGAACAGCTCCAATCACTCGAACAGTGATCTCTCCACCCAGCTGTGCGAGATCGATGACTCCGAGTACGAGGAGAGCCATCATCAGCAGCAGCAACCCCCGCACCACCATCCCCATCATCATCATCATCACCAGCATCACCATCATCAGCTCCTGCCACCGCAGGCGAACGTGTCGGCCGGTGGTTCGTCCGGAGGTGGCAGTGTCGCTTCGACCAGCGCCGGCAGTACCGGTGCGACCGCCAAACCGAAGCAACAGAAGGTCAAGTGGAGCAACGTCGTCCAGCAGACGGAAGTTTGACAGCGGCAGCTAATCGATGACAGCAGCAGCAGCAGCAGCACCCGCCCACAGGTGGCGCTAACAGATAAGACTTATTTTACTACTTCTATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2690#0 CCGGAACATTACGGAGGTGCCGGGCAGCGAGGTGCCGGACTCGTCCAGCTTCCACAGCAA 60 consensus_2690#1 ------------------------------------------------------------ consensus_2690#0 CGAAAGCAATGAATCGCACCCGAAAGCTAGTCTTCTTCCGCCGATTCTAGGACCGGTAGA 120 consensus_2690#1 ------------------------------------------------------------ consensus_2690#0 TTCGACGCGAGACATCGAAACGCTGAACGAGGATAACGAGTCGGAGTACGTGGACGACTC 180 consensus_2690#1 ------------------------------------------------------------ consensus_2690#0 GGAGTGTGATCAGAGTGAGCAGCCGCTTTCGTTGGGCTTCGAGCAGAACTCCTCCATATC 240 consensus_2690#1 ------------------------------------------------------------ consensus_2690#0 CTGCCTGAACCCGCTCGACAGTGGCAGTGAAGACTATAGATTTAACACAGCTGATAGTTA 300 consensus_2690#1 ------------------------------------------------------------ consensus_2690#0 TCTGCGTCATCCGAACAGCTACTTGCCGAAGTATAACATACAGAGCGAAACGGAGGGCGA 360 consensus_2690#1 ------CCGCCCACGCGTCCGCCCACGCGTCCGTAACATACAGAGCGAAACGGAGGGCGA 54 * ** * * * * *************************** consensus_2690#0 AAATGTGCCACTGACGGGCCGGAAGCCGCTGAACGGGCTCGAGATCGGCCGGCACCAGCT 420 consensus_2690#1 AAATGTGCCACTGACGGGCCGGAAGCCGCTGAACGGGCTCGAGATCGGCCGGCACCAGCT 114 ************************************************************ consensus_2690#0 GGTCGAGTCGGACGACGACGACGTCGAGTCGTACGGCTTTCCCCAAACGCGCCGGAACCG 480 consensus_2690#1 GGTCGAGTCGGACGACGACGACGTCGAGTCGTACGGCTTTCCCCAAACGCGCCGGAACCG 174 ************************************************************ consensus_2690#0 TCGCGAACCCAGTGATATCGATTTAGTTTTAAAAACTGACGAAGGCAGCTCTCTGCTAAG 540 consensus_2690#1 TCGCGAACCCAGTGATATCGATTTAGTTTTAAAAACTGACGAAGGCAGCTCTCTGCTAAG 234 ************************************************************ consensus_2690#0 CCATTCCCGCACGCTGAACAGCTCCAATCACTCGAACAGTGATCTCTCCACCCAGCTGTG 600 consensus_2690#1 CCATTCCCGCACGCTGAACAGCTCCAATCACTCGAACAGTGATCTCTCCACCCAGCTGTG 294 ************************************************************ consensus_2690#0 CGAGATCGATGACTCCGAGTACGAGGAGAGCCATCATCAGCAGCAGCAACCCCCGCACCA 660 consensus_2690#1 CGAGATCGATGACTCCGAGTACGAGGAGAGCCATCATCAGCAGCAGCAACCCCCGCACCA 354 ************************************************************ consensus_2690#0 CCATCCCCATCATCATCATC---------------------------------------- 680 consensus_2690#1 CCATCCCCATCATCATCATCATCACCAGCATCACCATCATCAGCTCCTGCCACCGCAGGC 414 ******************** consensus_2690#0 ------------------------------------------------------------ consensus_2690#1 GAACGTGTCGGCCGGTGGTTCGTCCGGAGGTGGCAGTGTCGCTTCGACCAGCGCCGGCAG 474 consensus_2690#0 ------------------------------------------------------------ consensus_2690#1 TACCGGTGCGACCGCCAAACCGAAGCAACAGAAGGTCAAGTGGAGCAACGTCGTCCAGCA 534 consensus_2690#0 ------------------------------------------------------------ consensus_2690#1 GACGGAAGTTTGACAGCGGCAGCTAATCGATGACAGCAGCAGCAGCAGCAGCACCCGCCC 594 consensus_2690#0 --------------------------------------------- consensus_2690#1 ACAGGTGGCGCTAACAGATAAGACTTATTTTACTACTTCTATTAC 639 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||