These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGATTCCCGAAGCAACAAAAAAAATATTTACCGTTTAAAATGCAAGCTTCTCGGGCCGAAAACGATTGCAATATTTGGTGTTAAATAGACAGAATAAACGAGCGTACTGATGGCGTCATCAACGATTACTACACTCTTTGCTTTGCCGTTTCGTACCGTCTGCCCCTAGCCGATTGCTGTTAACAACCTAGACTGTCAGCACACCGCTTCACACATGTCAAAACTCGGAGTGCAAAGTGTCCATCATCATCATGCATCATGAACGCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCACAAGTGTAATTCCGCCATCGCCACTGCTGCGGCACTGCAGACTGCTATGAAAAGCCTCAACAGTATGGTCACCCACACCATGAGCAATTCACTGGGCCACACTATGCAACATCGGCAACTCGTGCTACATGAAC] [+] EMBL BM590423 [CCGATTCCCGAAGCAACAAAAAAAATATTTACCGTTTAAAATGCAAGCTTCTCGGGCCGAAAACGATTGCAATATTTGGTGTTAAATAGACAGAATAAACGAGCGTACTGATGGCGTCATCAACGATTACTACACTCTTTGCTTTGCCGTTTCGTACCGTCTGCCCCTAGCCGATTGCTGTTAACAACCTAGACTGTCAGCACACCGCTTCACACATGTCAAAACTCGGAGTGCAAAGTGTCCATCATCATCATGCATCATGAACGCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCACAAGTGTAATTCCGCCATCGCCACTGCTGCGGCACTGCAGACTGCTATGAAAAGCCTCAACAGTATGGTCACCCACACCATGAGCAATTCACTGGGCCACACTATGCAACATCGGCAACTCGTGCTACATGAAC] consensusID : consensus_2708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATGTTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATGTCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATGAGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGCTGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAACCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCA] [+] EMBL BM638534 [CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATGTTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATGTCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATGAGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGCTGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAACCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2708#0 ------------CCGATTCCCG--AAGCAACAAAAAAAATATTTA---CCGTTTAAAATG 43 consensus_2708#1 CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATG 60 *** * * ** * * ** * * * * ** * *** **** consensus_2708#0 ----CAAGCTT---CTCGGGCCGAAAACGATTGCAATATTTGGTGT-TAAATAGACAGAA 95 consensus_2708#1 TTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATG 120 ***** * ** * * ** * ** * * **** ** consensus_2708#0 TAAACGAGCGTACTGATGGCGTCAT-CAACGATTACTAC-ACTCTTTGCTTTGCCGTTTC 153 consensus_2708#1 TCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATG 180 * * * *** *** * * * * * * ** ** ** ** * ** * consensus_2708#0 GTACCGTCTGCCCCTAGCCGATTGCTGTTAACAACCTAGACTGTCAGCACAC-CGCTTCA 212 consensus_2708#1 AGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGC 240 * ** ** * ** * ** * *** * ** *** consensus_2708#0 CACATGTCAAAACTCGGAGTGCAAAGT-GTCCATCATCATCATGCATCATGAACGCTGGC 271 consensus_2708#1 TGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAAC-CTGGC 299 * * * ***** * * ************************** ***** consensus_2708#0 AATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTG 331 consensus_2708#1 AATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTG 359 ************************************************************ consensus_2708#0 ATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTT 391 consensus_2708#1 ATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTT 419 ************************************************************ consensus_2708#0 GATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGT 451 consensus_2708#1 GATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGT 479 ************************************************************ consensus_2708#0 ACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGT 511 consensus_2708#1 ACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGT 539 ************************************************************ consensus_2708#0 ACGAGCTTTTCTGCGAACAGCATCATCACAAGTGTAATTCCGCCATCGCCACTGCTGCGG 571 consensus_2708#1 ACGAGCTTTTCTGCGAACAGCATCATCA-------------------------------- 567 **************************** consensus_2708#0 CACTGCAGACTGCTATGAAAAGCCTCAACAGTATGGTCACCCACACCATGAGCAATTCAC 631 consensus_2708#1 ------------------------------------------------------------ consensus_2708#0 TGGGCCACACTATGCAACATCGGCAACTCGTGCTACATGAAC 673 consensus_2708#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||