cluster # 2708

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Anopheles gambiae
cluster # 2708 cluster # 2708 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2708#0 length = 673 sequences # 1

consensus_2708#1 length = 567 sequences # 1

consensusID : consensus_2708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGATTCCCGAAGCAACAAAAAAAATATTTACCGTTTAAAATGCAAGCTTCTCGGGCCGAAAACGATTGCAATATTTGGTGTTAAATAGACAGAATAAACGAGCGTACTGATGGCGTCATCAACGATTACTACACTCTTTGCTTTGCCGTTTCGTACCGTCTGCCCCTAGCCGATTGCTGTTAACAACCTAGACTGTCAGCACACCGCTTCACACATGTCAAAACTCGGAGTGCAAAGTGTCCATCATCATCATGCATCATGAACGCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCACAAGTGTAATTCCGCCATCGCCACTGCTGCGGCACTGCAGACTGCTATGAAAAGCCTCAACAGTATGGTCACCCACACCATGAGCAATTCACTGGGCCACACTATGCAACATCGGCAACTCGTGCTACATGAAC]

[+] EMBL BM590423             [CCGATTCCCGAAGCAACAAAAAAAATATTTACCGTTTAAAATGCAAGCTTCTCGGGCCGAAAACGATTGCAATATTTGGTGTTAAATAGACAGAATAAACGAGCGTACTGATGGCGTCATCAACGATTACTACACTCTTTGCTTTGCCGTTTCGTACCGTCTGCCCCTAGCCGATTGCTGTTAACAACCTAGACTGTCAGCACACCGCTTCACACATGTCAAAACTCGGAGTGCAAAGTGTCCATCATCATCATGCATCATGAACGCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCACAAGTGTAATTCCGCCATCGCCACTGCTGCGGCACTGCAGACTGCTATGAAAAGCCTCAACAGTATGGTCACCCACACCATGAGCAATTCACTGGGCCACACTATGCAACATCGGCAACTCGTGCTACATGAAC]




>consensus_2708#0
CCGATTCCCGAAGCAACAAAAAAAATATTTACCGTTTAAAATGCAAGCTTCTCGGGCCGA
AAACGATTGCAATATTTGGTGTTAAATAGACAGAATAAACGAGCGTACTGATGGCGTCAT
CAACGATTACTACACTCTTTGCTTTGCCGTTTCGTACCGTCTGCCCCTAGCCGATTGCTG
TTAACAACCTAGACTGTCAGCACACCGCTTCACACATGTCAAAACTCGGAGTGCAAAGTG
TCCATCATCATCATGCATCATGAACGCTGGCAATCAGGTGGCAAATGACAGGTGCAACAT
AAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGA
ACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATT
GAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCA
ACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCAC
AAGTGTAATTCCGCCATCGCCACTGCTGCGGCACTGCAGACTGCTATGAAAAGCCTCAAC
AGTATGGTCACCCACACCATGAGCAATTCACTGGGCCACACTATGCAACATCGGCAACTC
GTGCTACATGAAC

consensusID : consensus_2708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATGTTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATGTCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATGAGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGCTGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAACCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCA]

[+] EMBL BM638534             [CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATGTTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATGTCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATGAGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGCTGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAACCTGGCAATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTGATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTACGAGCTTTTCTGCGAACAGCATCATCA]




>consensus_2708#1
CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATG
TTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATG
TCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATG
AGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGC
TGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAACCTGGCA
ATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTGA
TTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTTG
ATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGTA
CGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGTA
CGAGCTTTTCTGCGAACAGCATCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2708#0      ------------CCGATTCCCG--AAGCAACAAAAAAAATATTTA---CCGTTTAAAATG 43
consensus_2708#1      CCGCCCACGCGTCCGGTACTTACCAATGAGCTAAGATAGTTTATATGCCTGTTCGCAATG 60
                                  *** * *     **  * * ** * * * * **   * ***   ****

consensus_2708#0      ----CAAGCTT---CTCGGGCCGAAAACGATTGCAATATTTGGTGT-TAAATAGACAGAA 95
consensus_2708#1      TTCGCAAGCATAGTTCTGGACAGGCAATGTACATGATGATGATCAAATCAATAAACGATG 120
                          ***** *      ** * *  ** *      **  *       * **** **    

consensus_2708#0      TAAACGAGCGTACTGATGGCGTCAT-CAACGATTACTAC-ACTCTTTGCTTTGCCGTTTC 153
consensus_2708#1      TCACCTTGCGCTGAGATACCCTTTTGCGGCAAACCGTATTACATGTTACTGGGTTGTATG 180
                      * * *  ***    ***  * *  * *  * *    **  **   ** **  *  ** * 

consensus_2708#0      GTACCGTCTGCCCCTAGCCGATTGCTGTTAACAACCTAGACTGTCAGCACAC-CGCTTCA 212
consensus_2708#1      AGAGATAGTGTGAATATTTACATTATGCTTACCGTTTGTTTTGTAAACATTTATGCTGGC 240
                        *     **    **      *  ** * **    *    *** * **     ***   

consensus_2708#0      CACATGTCAAAACTCGGAGTGCAAAGT-GTCCATCATCATCATGCATCATGAACGCTGGC 271
consensus_2708#1      TGCGTTTAGTGTTGCGGAGCATAGTTTTGTCCATCATCATCATGCATCATGAAC-CTGGC 299
                        * * *       *****   *   * ************************** *****

consensus_2708#0      AATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTG 331
consensus_2708#1      AATCAGGTGGCAAATGACAGGTGCAACATAAAAACGGCAGTAAAGCGGCGATACAACTTG 359
                      ************************************************************

consensus_2708#0      ATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTT 391
consensus_2708#1      ATTGTTTACAAATAATTGTGATTAGAGGAACTTTTTATACTTTGTTTTAACAACTAATTT 419
                      ************************************************************

consensus_2708#0      GATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGT 451
consensus_2708#1      GATCACTTACCCATTGGGACGAGCACATTGAATGGTGGTGGATTGTTCTGTCCGTTCTGT 479
                      ************************************************************

consensus_2708#0      ACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGT 511
consensus_2708#1      ACGTCATGGTTCAGCAGTATGTATCGGCAACAGCAACAATTGTGAATGGAACAAACGCGT 539
                      ************************************************************

consensus_2708#0      ACGAGCTTTTCTGCGAACAGCATCATCACAAGTGTAATTCCGCCATCGCCACTGCTGCGG 571
consensus_2708#1      ACGAGCTTTTCTGCGAACAGCATCATCA-------------------------------- 567
                      ****************************                                

consensus_2708#0      CACTGCAGACTGCTATGAAAAGCCTCAACAGTATGGTCACCCACACCATGAGCAATTCAC 631
consensus_2708#1      ------------------------------------------------------------
                                                                                  

consensus_2708#0      TGGGCCACACTATGCAACATCGGCAACTCGTGCTACATGAAC 673
consensus_2708#1      ------------------------------------------