cluster # 2709

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2709 cluster # 2709 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2709#0 length = 706 sequences # 1

consensus_2709#1 length = 620 sequences # 1

consensusID : consensus_2709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCGGACGCGTGGGTTTGCACACACAAAAAAAAGGAATAGAAGATTAAAGCATTTTGGCAAAATCGAATCGCTCGCGCCAAAACGTGTCATGAAAATTCAATTTATCGTTCCTGCTTCGGCTTCTTCATCCTGCCCCAACGGCCTTTCAGGCGTGTTGGGTGTTTCTGTGGTGTGATTTGTGCGTGTGTGTGATTGCTATCCAGCGTGATTCGCTTCTCCATCGCTTCTTCGGCAGTGCGCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCGCGCCGGGTTGGATTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACACACATAACACACAGCTGAAAGGCCACCGAGATCCCCATCAGTCTGCGGTCCATCGTTAGGATCCCCCTTACCCGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGCGTGCTTGTTTCTCCGTGCAGAATGTTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCGAGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATGACGACAGCTGGGTCATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGTGCGATCGTGTGTAGTGACAGCGGTCGTCTGGCAACGAAACGGCCTTTGAGAACACATCATTTAGAAACA]

[+] EMBL BM577384             [CCGCGGACGCGTGGGTTTGCACACACAAAAAAAAGGAATAGAAGATTAAAGCATTTTGGCAAAATCGAATCGCTCGCGCCAAAACGTGTCATGAAAATTCAATTTATCGTTCCTGCTTCGGCTTCTTCATCCTGCCCCAACGGCCTTTCAGGCGTGTTGGGTGTTTCTGTGGTGTGATTTGTGCGTGTGTGTGATTGCTATCCAGCGTGATTCGCTTCTCCATCGCTTCTTCGGCAGTGCGCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCGCGCCGGGTTGGATTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACACACATAACACACAGCTGAAAGGCCACCGAGATCCCCATCAGTCTGCGGTCCATCGTTAGGATCCCCCTTACCCGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGCGTGCTTGTTTCTCCGTGCAGAATGTTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCGAGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATGACGACAGCTGGGTCATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGTGCGATCGTGTGTAGTGACAGCGGTCGTCTGGCAACGAAACGGCCTTTGAGAACACATCATTTAGAAACA]




>consensus_2709#0
CCGCGGACGCGTGGGTTTGCACACACAAAAAAAAGGAATAGAAGATTAAAGCATTTTGGC
AAAATCGAATCGCTCGCGCCAAAACGTGTCATGAAAATTCAATTTATCGTTCCTGCTTCG
GCTTCTTCATCCTGCCCCAACGGCCTTTCAGGCGTGTTGGGTGTTTCTGTGGTGTGATTT
GTGCGTGTGTGTGATTGCTATCCAGCGTGATTCGCTTCTCCATCGCTTCTTCGGCAGTGC
GCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCG
CGCCGGGTTGGATTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACA
CACATAACACACAGCTGAAAGGCCACCGAGATCCCCATCAGTCTGCGGTCCATCGTTAGG
ATCCCCCTTACCCGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGC
GTGCTTGTTTCTCCGTGCAGAATGTTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCG
AGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATGACGACAGCTGGGTC
ATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGTGCGATCGTGTGTAGTGACAGCGG
TCGTCTGGCAACGAAACGGCCTTTGAGAACACATCATTTAGAAACA

consensusID : consensus_2709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCACGCGTCCGCCCACGCGTCCGGCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCGCGCCGGGTTGGTTTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACACACATAACACACAGCTGAAAGGCCACTGAGATCCCCATCAGTCTGCGGTCCATCGTTAGGATCCCCCTTACACGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGCGTGTTTGATTCTCCGTGCAGAATGCTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCGAGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATGACAGCTGGGTCATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGAGCGATCGTGTGTAGTGACAGCAGTCTAGGCAACAACACAGCCTTTGAGAACACATCATTTAGAAACAAATTAGTGAGCGTTTGTGTATGTGGTGCGTGCAATGCTAATACAATGAAGCAACGGCACCATCGACGACAGCATCATCCGCATCATCACAGTGACAGTGGTTGCTATAGTAGTGGTAGCGACATGGCGTTGACAGC]

[+] EMBL BM613374             [CCACGCGTCCGCCCACGCGTCCGGCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCGCGCCGGGTTGGTTTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACACACATAACACACAGCTGAAAGGCCACTGAGATCCCCATCAGTCTGCGGTCCATCGTTAGGATCCCCCTTACACGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGCGTGTTTGATTCTCCGTGCAGAATGCTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCGAGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATGACAGCTGGGTCATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGAGCGATCGTGTGTAGTGACAGCAGTCTAGGCAACAACACAGCCTTTGAGAACACATCATTTAGAAACAAATTAGTGAGCGTTTGTGTATGTGGTGCGTGCAATGCTAATACAATGAAGCAACGGCACCATCGACGACAGCATCATCCGCATCATCACAGTGACAGTGGTTGCTATAGTAGTGGTAGCGACATGGCGTTGACAGC]




>consensus_2709#1
CCACGCGTCCGCCCACGCGTCCGGCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTC
AACATAAATCTCCCAATAGGTCGCGCCGGGTTGGTTTTTGGCCTGTTGTTGGCCTTGGAA
AGAAGAGAAGATTGCGATAAACACACATAACACACAGCTGAAAGGCCACTGAGATCCCCA
TCAGTCTGCGGTCCATCGTTAGGATCCCCCTTACACGAGCTGGAAGTGCGTTTGACATTT
TCGGATTATTCTGTGCAGTGTGCGTGTTTGATTCTCCGTGCAGAATGCTGCAAACTTCTT
GATCTGCAGCAGTGTGTGATGCGAGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGA
ATCGAGATGACAGCTGGGTCATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGAGCG
ATCGTGTGTAGTGACAGCAGTCTAGGCAACAACACAGCCTTTGAGAACACATCATTTAGA
AACAAATTAGTGAGCGTTTGTGTATGTGGTGCGTGCAATGCTAATACAATGAAGCAACGG
CACCATCGACGACAGCATCATCCGCATCATCACAGTGACAGTGGTTGCTATAGTAGTGGT
AGCGACATGGCGTTGACAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2709#0      CCGCGGACGCGTGGGTTTGCACACACAAAAAAAAGGAATAGAAGATTAAAGCATTTTGGC 60
consensus_2709#1      ------------------------------------------------------------
                                                                                  

consensus_2709#0      AAAATCGAATCGCTCGCGCCAAAACGTGTCATGAAAATTCAATTTATCGTTCCTGCTTCG 120
consensus_2709#1      ------------------------------------------------------------
                                                                                  

consensus_2709#0      GCTTCTTCATCCTGCCCCAACGGCCTTTCAGGCGTGTTGGGTGTTTCTGTGGTGTGATTT 180
consensus_2709#1      ------------------------------------------------------------
                                                                                  

consensus_2709#0      GTGCGTGTGTGTGATTGCTATCCAGCGTGATTCGCTTCTCCATCGCTTCTTCGGCAGTGC 240
consensus_2709#1      -------------------------------------CCACGCGTCCGCCCACGCGTCCG 23
                                                           *  *    *  *    **     

consensus_2709#0      GCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCG 300
consensus_2709#1      GCGTCGTGTGTTTGTGACAAAACAACGGAAAGCACTCAACATAAATCTCCCAATAGGTCG 83
                      ************************************************************

consensus_2709#0      CGCCGGGTTGGATTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACA 360
consensus_2709#1      CGCCGGGTTGGTTTTTGGCCTGTTGTTGGCCTTGGAAAGAAGAGAAGATTGCGATAAACA 143
                      *********** ************************************************

consensus_2709#0      CACATAACACACAGCTGAAAGGCCACCGAGATCCCCATCAGTCTGCGGTCCATCGTTAGG 420
consensus_2709#1      CACATAACACACAGCTGAAAGGCCACTGAGATCCCCATCAGTCTGCGGTCCATCGTTAGG 203
                      ************************** *********************************

consensus_2709#0      ATCCCCCTTACCCGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGC 480
consensus_2709#1      ATCCCCCTTACACGAGCTGGAAGTGCGTTTGACATTTTCGGATTATTCTGTGCAGTGTGC 263
                      *********** ************************************************

consensus_2709#0      GTGCTTGTTTCTCCGTGCAGAATGTTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCG 540
consensus_2709#1      GTGTTTGATTCTCCGTGCAGAATGCTGCAAACTTCTTGATCTGCAGCAGTGTGTGATGCG 323
                      *** *** **************** ***********************************

consensus_2709#0      AGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATGACGACAGCTGGGTC 600
consensus_2709#1      AGCCTTTCGTGCGTTGCGATAGATAAACAAAACCCGAATCGAGATG---ACAGCTGGGTC 380
                      **********************************************   ***********

consensus_2709#0      ATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGTGCGATCGTGTGTAGTGACAGCGG 660
consensus_2709#1      ATCCTGTTGAGCGCTTGCCTGCTGTGAGATCGTGTGAGCGATCGTGTGTAGTGACAGCAG 440
                      ************************************ ********************* *

consensus_2709#0      TCGTCTGGCAACGAAACGGCCTTTGAGAACACATCATTTAGAAACA-------------- 706
consensus_2709#1      TC--TAGGCAACAACACAGCCTTTGAGAACACATCATTTAGAAACAAATTAGTGAGCGTT 498
                      **    ****** * ** ****************************              

consensus_2709#0      ------------------------------------------------------------
consensus_2709#1      TGTGTATGTGGTGCGTGCAATGCTAATACAATGAAGCAACGGCACCATCGACGACAGCAT 558
                                                                                  

consensus_2709#0      ------------------------------------------------------------
consensus_2709#1      CATCCGCATCATCACAGTGACAGTGGTTGCTATAGTAGTGGTAGCGACATGGCGTTGACA 618
                                                                                  

consensus_2709#0      --
consensus_2709#1      GC 620