These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCTTACCTGCCGCTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAACTTCTGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGCTGAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAACAACCAACCAATATAAAAACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAACAGTGCTGACGCTACAGACTTGGCGTGTGATGC] [+] EMBL BM654687 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCTTACCTGCCGCTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAACTTCTGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGCTGAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAACAACCAACCAATATAAAAACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAACAGTGCTGACGCTACAGACTTGGCGTGTGATGC] consensusID : consensus_2721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACGCGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC] [+] EMBL BM638852 [CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACGCGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2721#0 ------------------------------------CCGCCCACGC---GTCCGCCCACG 21 consensus_2721#1 CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACG 60 * * * ** ** *** consensus_2721#0 CGTCCG--GTCTTACCTGCCGCTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGT 79 consensus_2721#1 CGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGT 120 *** * ************ *************************************** consensus_2721#0 GTGT--TAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGC 137 consensus_2721#1 GTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGC 180 **** ****************************************************** consensus_2721#0 GGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCT-CC 196 consensus_2721#1 GGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCC 240 ** ***************************************************** ** consensus_2721#0 GATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAA 256 consensus_2721#1 GATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAA 300 ************************************************************ consensus_2721#0 AAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAACTTCTGTTT 316 consensus_2721#1 AAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTT 360 ************************************************** **** **** consensus_2721#0 CTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCT 376 consensus_2721#1 CTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCT 420 ************************************************************ consensus_2721#0 TGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGG 436 consensus_2721#1 TGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGG 480 ************************************************************ consensus_2721#0 ACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGCT 496 consensus_2721#1 ACGAAAAGAAGACAAAAAA-GGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC- 538 ******************* *************************************** consensus_2721#0 GAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAACAACCAACCAATATAAA 556 consensus_2721#1 ------------------------------------------------------------ consensus_2721#0 AACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAACAGTGCTGACGCTACA 616 consensus_2721#1 ------------------------------------------------------------ consensus_2721#0 GACTTGGCGTGTGATGC 633 consensus_2721#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||