cluster # 2721

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2721 cluster # 2721 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2721#0 length = 633 sequences # 1

consensus_2721#1 length = 538 sequences # 1

consensusID : consensus_2721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTCTTACCTGCCGCTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAACTTCTGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGCTGAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAACAACCAACCAATATAAAAACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAACAGTGCTGACGCTACAGACTTGGCGTGTGATGC]

[+] EMBL BM654687             [CCGCCCACGCGTCCGCCCACGCGTCCGGTCTTACCTGCCGCTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAACTTCTGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGCTGAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAACAACCAACCAATATAAAAACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAACAGTGCTGACGCTACAGACTTGGCGTGTGATGC]




>consensus_2721#0
CCGCCCACGCGTCCGCCCACGCGTCCGGTCTTACCTGCCGCTGGATGGATAATCGAAAGC
AGCCCGTTTGTAAGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTT
ATGAAGCAGCAGTGAGCGGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCAT
TCCATTCCCACCCTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTT
TGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCT
GTGCCAACTTCTGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCG
TGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGC
ATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAG
CCGACGAATGCTGGCTGAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAAC
AACCAACCAATATAAAAACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAA
CAGTGCTGACGCTACAGACTTGGCGTGTGATGC

consensusID : consensus_2721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACGCGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC]

[+] EMBL BM638852             [CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACGCGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGTGTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGCGGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCCGATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAAAAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTTCTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCTTGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGGACGAAAAGAAGACAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC]




>consensus_2721#1
CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACG
CGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGT
GTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGC
GGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCC
GATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAA
AAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTT
CTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCT
TGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGG
ACGAAAAGAAGACAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2721#0      ------------------------------------CCGCCCACGC---GTCCGCCCACG 21
consensus_2721#1      CGACCCACGCGTCCGGATTTTTCCTTTCCGCTTGGGCTGGAAATATATTGTTCGTTTACG 60
                                                          * *   *      ** **   ***

consensus_2721#0      CGTCCG--GTCTTACCTGCCGCTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGT 79
consensus_2721#1      CGTGTGACGTCTTACCTGCCACTGGATGGATAATCGAAAGCAGCCCGTTTGTAAGTGTGT 120
                      ***  *  ************ ***************************************

consensus_2721#0      GTGT--TAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGC 137
consensus_2721#1      GTGTGTTAGTTCAAAGGTTTCGAAACAGTGTGTGGTGAACGTTATGAAGCAGCAGTGAGC 180
                      ****  ******************************************************

consensus_2721#0      GGGCAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCT-CC 196
consensus_2721#1      GGAAAAAAAGGGAGCAGCGACGAAAACAACCGGGCGGCTCCATTCCATTCCCACCCTTCC 240
                      **  ***************************************************** **

consensus_2721#0      GATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAA 256
consensus_2721#1      GATAGGTCACAATGAAAATGGCCCATTTTTGATTATTTTCTGTTTGCCTCGCCCCAATAA 300
                      ************************************************************

consensus_2721#0      AAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAACTTCTGTTT 316
consensus_2721#1      AAACAAGACGTGTGGCAAACTTTACACCACACACCGGTAGGTCTGTGCCAGCTTCAGTTT 360
                      ************************************************** **** ****

consensus_2721#0      CTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCT 376
consensus_2721#1      CTGCCACGAAAAAGCCGCCCGGATCGAAGTAGGCGTGTGAGCCGTGTGCGAGGTAGTGCT 420
                      ************************************************************

consensus_2721#0      TGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGG 436
consensus_2721#1      TGTTTCTTGTGCGCCAGTGTGCTTAGAGACACCCGGCAGTGAGCATCGCTAGTGGCTCGG 480
                      ************************************************************

consensus_2721#0      ACGAAAAGAAGACAAAAAAAGGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGCT 496
consensus_2721#1      ACGAAAAGAAGACAAAAAA-GGAACAAGAAATCATCCTTTCCAGCCGACGAATGCTGGC- 538
                      ******************* *************************************** 

consensus_2721#0      GAGAAAGAGGGAGGAGGGAAATAATCGAAAAGGTCACCGAAAACAACCAACCAATATAAA 556
consensus_2721#1      ------------------------------------------------------------
                                                                                  

consensus_2721#0      AACCAGCAAGAAGACCAACAACAACAAAGGCTCGTTCAACCCAACAGTGCTGACGCTACA 616
consensus_2721#1      ------------------------------------------------------------
                                                                                  

consensus_2721#0      GACTTGGCGTGTGATGC 633
consensus_2721#1      -----------------