cluster # 2723

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Anopheles gambiae
cluster # 2723 cluster # 2723 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2723#0 length = 641 sequences # 1

consensus_2723#1 length = 631 sequences # 1

consensusID : consensus_2723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAACCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGGATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTCTATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAATATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACTGTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAAGAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCCGCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATCTTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGGCAAGTACCATTTCGACAAGTTGTAAAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGCGAACTCAAGCAGTTGTCAATTAACAATACAGTATCGAGCGA]

[+] EMBL BM643976             [CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAACCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGGATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTCTATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAATATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACTGTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAAGAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCCGCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATCTTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGGCAAGTACCATTTCGACAAGTTGTAAAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGCGAACTCAAGCAGTTGTCAATTAACAATACAGTATCGAGCGA]




>consensus_2723#0
CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAA
CCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGG
ATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTC
TATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAAT
ATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACT
GTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAA
GAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCC
GCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATC
TTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGGCAAGTACCATTTCGACAAGTTGT
AAAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGC
GAACTCAAGCAGTTGTCAATTAACAATACAGTATCGAGCGA

consensusID : consensus_2723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAACCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGGATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTCTATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAATATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACTGTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAAGAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCCGCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATCTTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGAGTTGTACAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGCGAACTCAAGCAGTTGTCCATTAACAATACAGTATCGAGCGATGGCACCG]

[+] EMBL BM638861             [CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAACCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGGATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTCTATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAATATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACTGTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAAGAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCCGCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATCTTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGAGTTGTACAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGCGAACTCAAGCAGTTGTCCATTAACAATACAGTATCGAGCGATGGCACCG]




>consensus_2723#1
CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAA
CCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGG
ATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTC
TATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAAT
ATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACT
GTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAA
GAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCC
GCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATC
TTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGAGTTGTACAACGGATAGCCCATCG
CACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGCGAACTCAAGCAGTTGTCC
ATTAACAATACAGTATCGAGCGATGGCACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2723#0      CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAA 60
consensus_2723#1      CCGCGACTCTCTTCATGTTAAAACAGTTATAGGAAGTTGTCCTGCACAATGGGGGAGCAA 60
                      ************************************************************

consensus_2723#0      CCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGG 120
consensus_2723#1      CCAATTTTCACTTGCAACGCTCATGTGTTCCACATAGATCCCAAAACCAAACGCACCTGG 120
                      ************************************************************

consensus_2723#0      ATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTC 180
consensus_2723#1      ATAACCGCAAGTTCGAAGGCCATCGCCGTTAGTTTCTTCTATGATTCCTCTCGCAATCTC 180
                      ************************************************************

consensus_2723#0      TATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAAT 240
consensus_2723#1      TATCGAATCATCAGCGTTGAAGGGAGCAAGGCTGTTATCAATTCCACTATTACTCCTAAT 240
                      ************************************************************

consensus_2723#0      ATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACT 300
consensus_2723#1      ATGACCTTCACTCAAACATCCCAGAAGTTTGGTCAATGGAGTGATGTACGTGCCAATACT 300
                      ************************************************************

consensus_2723#0      GTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAA 360
consensus_2723#1      GTGTACGGGCTGGGTTTTGCATCGGAAGCGGAACTTGGAAAGTTTATAGTAAAGTTTCAA 360
                      ************************************************************

consensus_2723#0      GAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCC 420
consensus_2723#1      GAGGTAAAGGAAGCCACTAAGGACGCTCTCAACAAGGCCTCCGCAAATGGCAACTCGGCC 420
                      ************************************************************

consensus_2723#0      GCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATC 480
consensus_2723#1      GCAGCTTCGGCTAACGCATCGCCAATAACGGCTCGTGCTTCGGCCAATAGTGGCGATATC 480
                      ************************************************************

consensus_2723#0      TTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCGGCAAGTACCATTTCGACAAGTTGT 540
consensus_2723#1      TTCGAGTCTGGAAACTTGGAGCCACCACTAGCACCG------------------AGTTGT 522
                      ************************************                  ******

consensus_2723#0      AAAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGC 600
consensus_2723#1      ACAACGGATAGCCCATCGCACAACAATATCAGTGAGACGAATGCTAACAATCTGAATAGC 582
                      * **********************************************************

consensus_2723#0      GAACTCAAGCAGTTGTCAATTAACAATACAGTATCGAGCGA-------- 641
consensus_2723#1      GAACTCAAGCAGTTGTCCATTAACAATACAGTATCGAGCGATGGCACCG 631
                      ***************** ***********************