These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGGCCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAAGGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTTCCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATGCAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTCACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCACTGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCCACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTTCGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCAGGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAAAGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGGNTGAGAGTTAGACGGGAATTGGGACCGTATACCC] [+] EMBL BX468368 [GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGGCCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAAGGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTTCCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATGCAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTCACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCACTGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCCACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTTCGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCAGGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAAAGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGGNTGAGAGTTAGACGGGAATTGGGACCGTATACCC] consensusID : consensus_273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GCAGAATCGCCACGAGNNTGAAAAGAACGTGTTGTGGTGAAGCATGATGGATGCAGTGGTTTTCAGTGTTTGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGCACGCTTGCTGCACGTGCACTGCAGTGGCATCGAGCCGTCAAGACAGTGTTTAATTTTTACCGTGTACGCAGCCCACATTTTGCATAAAAATGCGAAGAATCCTCTTACAGTTGACGATCTGCTTCGTGTTGATCGAAACGCCTAGTGTGTGGTGTAAATTGTCCAGCTACAAAGCCATCGTACCGCCAGCGAAGATCAAGTCCGACGAGAATGCAAAATTTGCAGAAGTGAATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCATGTTACTTGATCGTCTGAT] [+] EMBL BX467238 [GCAGAATCGCCACGAGNNTGAAAAGAACGTGTTGTGGTGAAGCATGATGGATGCAGTGGTTTTCAGTGTTTGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAACTATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGCACGCTTGCTGCACGTGCACTGCAGTGGCATCGAGCCGTCAAGACAGTGTTTAATTTTTACCGTGTACGCAGCCCACATTTTGCATAAAAATGCGAAGAATCCTCTTACAGTTGACGATCTGCTTCGTGTTGATCGAAACGCCTAGTGTGTGGTGTAAATTGTCCAGCTACAAAGCCATCGTACCGCCAGCGAAGATCAAGTCCGACGAGAATGCAAAATTTGCAGAAGTGAATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCATGTTACTTGATCGTCTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_273#0 GGCAAGAATCGGCACTGAGATCACTGTCGAGTACGGTCGCAGTTCCTGAGACAGGTCTGG 60 consensus_273#1 ------------------------------------------------------------ consensus_273#0 CCTGCAGTTTTGAATCACGTTTCATTTGTAGCAATATTACCTTAGTTAACGAAAACGGAA 120 consensus_273#1 ------------------------------------------------------------ consensus_273#0 GGAAGGAAAATATATTTACAACCGGGTGTTATACACAGTACCACAACAGGAAGAGATTTT 180 consensus_273#1 ------------------------------------------------------------ consensus_273#0 CCGATCGCTGGCCGCTGATAGAGCTGAAACGAACCGTGTTGTGGTGAAGCATGATGGATG 240 consensus_273#1 ------------------------------------------------------------ consensus_273#0 CAGTGGTGAATAATTAATCCTTTGCCGGTTGTATATGCCGGCGGGCAAGAGTTGGCGGTC 300 consensus_273#1 ----GCAGAATCGCCACGAGNNTG--AAAAGAACGTGTTG--TGGTGAAGCATGATGGAT 52 * **** * ** * * ** * ** * ** ** consensus_273#0 ACAGTGAGTGGTTTTCAGTGTTTAGGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAAC 360 consensus_273#1 GCAGTG----GTTTTCAGTGTTT-GGCGTGATTGTGACAAATTTTCAGCTGTGTAAAAAC 107 ***** ************* ************************************ consensus_273#0 TATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAGGCACGCTTGCTGCGACGTGCAC 420 consensus_273#1 TATCTCTATTCTGTCACTGGACCAAACCCCGTTTTGAG-CACGCTTGCTGC-ACGTGCAC 165 ************************************** ************ ******** consensus_273#0 TGCAGTGGCATCGAACCGTCAAGACGAGTGTTGAACTAGTGNAACCGCGTACGCAGAGCC 480 consensus_273#1 TGCAGTGGCATCGAGCCGTCAAGAC-AGTGTTTAAT---TTTTACCGTGTACGCAGC-CC 220 ************** ********** ****** ** * **** ******** ** consensus_273#0 ACATTGTGGGCATAGAGAGAATGCGGAAGAATCCNTTCGTTACAAGTTGACGATCTGCTT 540 consensus_273#1 ACATTTTG--CATA---AAAATGCG-AAGAATCCTCTTAC----AGTTGACGATCTGCTT 270 ***** ** **** * ****** ******** * **************** consensus_273#0 CGGTGTTGCTCGGAGAACGGCCGTAAGATGGTGATGGGCTAGTCAGAATNNGGTCNACCA 600 consensus_273#1 CG-TGTTGATCGAA--ACGCCTAGTGTGTGGTG-TAAATTGTCCAGCTACAAAGCCATCG 326 ** ***** *** * *** * ***** * * *** * * * consensus_273#0 GGGCTTAGCAAAGAGGGCCAAGTNCGGTTAGCCCGGGGCCANAGGGNGGACAGAATTCAA 660 consensus_273#1 TACCGC--CAGCGAAGATCAAGTCCGA------CGAGAATGCAAAATTTGCAGAAGT--G 376 * ** ** * ***** ** ** * * ***** * consensus_273#0 AGGTTCCCCGGACAGCGGAAGGAAGATTTGGCCTAGACGCANTCNTCACGCCAGGAACGG 720 consensus_273#1 AATTACGATGACTATCCGATGGTAGTACCGAAACGGGCGGCCATGTTACTTGATCGTCTG 436 * * * * * * ** ** ** * * ** * ** * * * consensus_273#0 NTGAGAGTTAGACGGGAATTGGGACCGTATACCC 754 consensus_273#1 AT-------------------------------- 438 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||