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Anopheles gambiae
cluster # 2738 cluster # 2738       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2738#0 length = 811 sequences # 1  
consensus_2738#1 length = 450 sequences # 1  

consensusID : consensus_2738#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 811
fasta sequence
                              [AATCGCCCGAGGTTAAACGAAAGCACTTAACAGAAGCAGCAGCTAATTTCTTAACCCCGAAAACGGCAAGCCTATCACGACCCGCTGCGTACGTGCCGGATGGAACAGTTTATATGCTCATTTACTTGTGAAACAAAAGAACAAAACCATTTAAATCAAATTATAAATGTCTATGATGCTGTGATGATGCCTGATGATGCCACATGAACATGTGATGCATGATGTAAATGAAAATGTGAAATGTGAAAATGTGTGAAATGTAACTGTAACAAAATTCACACATAAAAAGTGTAAGAAACTGTGTGTATGCCTAGTGTTGTAGAGTGTGTAATGTGAAAACACACACACAAAACAAAACACAAAAACTNAATAAACAATACGATACGTTGTAAGATATTGGTATAGAAGTTGTTGTTGTTGTTGTGCTGAAGAAGTTGCTAATATATAAATAATTATAACATTAACATTATAACACTTATTATATNAATAACCACTACTTACNCCGTCTCAANTTGTAGTACTAANCATNTCCTCACTCCCAATATCTNCCATGCCAAAAACCCCACNTAAAACCCCCCAATGCANGTGCTAAAAGCAATGTATCCGCACACGCACANACGCNTTNCACACNCCACCCCAGCCAGCAGAAGACAAATAATGAACTCAAAACAANGTAAGAAAAACATTAAAACAAAACCAAACACNTTACACNAACAACAGGTACCCCCCACACGCCTACCAACACCCCACTCGACACACCANCACAACACCAGNGCNNCACANNNACTGCAACGCGTGGACCANACNCCNG]

[+] EMBL AL931779             [AATCGCCCGAGGTTAAACGAAAGCACTTAACAGAAGCAGCAGCTAATTTCTTAACCCCGAAAACGGCAAGCCTATCACGACCCGCTGCGTACGTGCCGGATGGAACAGTTTATATGCTCATTTACTTGTGAAACAAAAGAACAAAACCATTTAAATCAAATTATAAATGTCTATGATGCTGTGATGATGCCTGATGATGCCACATGAACATGTGATGCATGATGTAAATGAAAATGTGAAATGTGAAAATGTGTGAAATGTAACTGTAACAAAATTCACACATAAAAAGTGTAAGAAACTGTGTGTATGCCTAGTGTTGTAGAGTGTGTAATGTGAAAACACACACACAAAACAAAACACAAAAACTNAATAAACAATACGATACGTTGTAAGATATTGGTATAGAAGTTGTTGTTGTTGTTGTGCTGAAGAAGTTGCTAATATATAAATAATTATAACATTAACATTATAACACTTATTATATNAATAACCACTACTTACNCCGTCTCAANTTGTAGTACTAANCATNTCCTCACTCCCAATATCTNCCATGCCAAAAACCCCACNTAAAACCCCCCAATGCANGTGCTAAAAGCAATGTATCCGCACACGCACANACGCNTTNCACACNCCACCCCAGCCAGCAGAAGACAAATAATGAACTCAAAACAANGTAAGAAAAACATTAAAACAAAACCAAACACNTTACACNAACAACAGGTACCCCCCACACGCCTACCAACACCCCACTCGACACACCANCACAACACCAGNGCNNCACANNNACTGCAACGCGTGGACCANACNCCNG]


>consensus_2738#0 AATCGCCCGAGGTTAAACGAAAGCACTTAACAGAAGCAGCAGCTAATTTCTTAACCCCGA AAACGGCAAGCCTATCACGACCCGCTGCGTACGTGCCGGATGGAACAGTTTATATGCTCA TTTACTTGTGAAACAAAAGAACAAAACCATTTAAATCAAATTATAAATGTCTATGATGCT GTGATGATGCCTGATGATGCCACATGAACATGTGATGCATGATGTAAATGAAAATGTGAA ATGTGAAAATGTGTGAAATGTAACTGTAACAAAATTCACACATAAAAAGTGTAAGAAACT GTGTGTATGCCTAGTGTTGTAGAGTGTGTAATGTGAAAACACACACACAAAACAAAACAC AAAAACTNAATAAACAATACGATACGTTGTAAGATATTGGTATAGAAGTTGTTGTTGTTG TTGTGCTGAAGAAGTTGCTAATATATAAATAATTATAACATTAACATTATAACACTTATT ATATNAATAACCACTACTTACNCCGTCTCAANTTGTAGTACTAANCATNTCCTCACTCCC AATATCTNCCATGCCAAAAACCCCACNTAAAACCCCCCAATGCANGTGCTAAAAGCAATG TATCCGCACACGCACANACGCNTTNCACACNCCACCCCAGCCAGCAGAAGACAAATAATG AACTCAAAACAANGTAAGAAAAACATTAAAACAAAACCAAACACNTTACACNAACAACAG GTACCCCCCACACGCCTACCAACACCCCACTCGACACACCANCACAACACCAGNGCNNCA CANNNACTGCAACGCGTGGACCANACNCCNG



consensusID : consensus_2738#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence
                              [TCCAACCGTGCAAGCGTGCTGGCCGAGTGGTGCGTTGTTGAAGGGTTTGAAGGAAATTCGCCAATCGCTTGAAGAAACGTTTTAAAGGCAAAAAAAAAGAAAGCGTTGCTCCCAACGGAAGATCAAACACCTTTTTTTCTTAGTTTGATTGGAAAGGGGAAACAAATGAAACGAAAGCACTTAAGAAGCAGCAGCTAATTTCTTAACCCCGAAAACGACAAGCCTATCACGACCCGCTGCGTACGTGCCGGATGGAACAGTTTATAGCTCATTTACTGTGAAACAAAAGAACAAAACCATTTAAATCAAATTATAAAGTCTAGAGCGGAGAGCCGAGAGCCACAGAACAGGAGCAGAGTAAAGAAAATGGAATGGAAAAGTGGAGAGTAACGCACAATTCACACATAAAAAGGTAAGAAACGCGGTAGCCTAGTGTGTAGAGTGGTAAGG]

[+] EMBL BX611671             [TCCAACCGTGCAAGCGTGCTGGCCGAGTGGTGCGTTGTTGAAGGGTTTGAAGGAAATTCGCCAATCGCTTGAAGAAACGTTTTAAAGGCAAAAAAAAAGAAAGCGTTGCTCCCAACGGAAGATCAAACACCTTTTTTTCTTAGTTTGATTGGAAAGGGGAAACAAATGAAACGAAAGCACTTAAGAAGCAGCAGCTAATTTCTTAACCCCGAAAACGACAAGCCTATCACGACCCGCTGCGTACGTGCCGGATGGAACAGTTTATAGCTCATTTACTGTGAAACAAAAGAACAAAACCATTTAAATCAAATTATAAAGTCTAGAGCGGAGAGCCGAGAGCCACAGAACAGGAGCAGAGTAAAGAAAATGGAATGGAAAAGTGGAGAGTAACGCACAATTCACACATAAAAAGGTAAGAAACGCGGTAGCCTAGTGTGTAGAGTGGTAAGG]


>consensus_2738#1 TCCAACCGTGCAAGCGTGCTGGCCGAGTGGTGCGTTGTTGAAGGGTTTGAAGGAAATTCG CCAATCGCTTGAAGAAACGTTTTAAAGGCAAAAAAAAAGAAAGCGTTGCTCCCAACGGAA GATCAAACACCTTTTTTTCTTAGTTTGATTGGAAAGGGGAAACAAATGAAACGAAAGCAC TTAAGAAGCAGCAGCTAATTTCTTAACCCCGAAAACGACAAGCCTATCACGACCCGCTGC GTACGTGCCGGATGGAACAGTTTATAGCTCATTTACTGTGAAACAAAAGAACAAAACCAT TTAAATCAAATTATAAAGTCTAGAGCGGAGAGCCGAGAGCCACAGAACAGGAGCAGAGTA AAGAAAATGGAATGGAAAAGTGGAGAGTAACGCACAATTCACACATAAAAAGGTAAGAAA CGCGGTAGCCTAGTGTGTAGAGTGGTAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2738#0      AATCGCCCGAGGTTAAACGAAAGCACTTAACAGAAGCAGCAGCTAATTTCTTAACCCCGA 60
consensus_2738#1      ------------------------------------------------------------
                                                                                  

consensus_2738#0      AAACGGCAAGCCTATCACGACCCGCTGCGTACGTGCCGGATGGAACAGTTTATATGCTCA 120
consensus_2738#1      ------------------------------------------------------------
                                                                                  

consensus_2738#0      TTTACTTGTGAAACAAAAGAACAAAACCATTTAAATCAAATTATAAATGTCTATGATGCT 180
consensus_2738#1      ---------------------------------------------------TCCAACCGT 9
                                                                         *   *   *

consensus_2738#0      GTGATGATGCCTGATGATGCCACATGAACATGTGATGCATGATGTAAATGAAAATGTGAA 240
consensus_2738#1      GCAAGCGTGCTGGCCGA-GTGGTGCGTTGTTGAAGGGTTTGAAGGAAATTCGCCAATCGC 68
                      *  *   ***  *  ** *      *    **    *  *** * ****       *   

consensus_2738#0      ATGTGAAAATGTGTGAAATGTAACTGTAACAAAATTCACACATAAAAAGTGTAAG-AAAC 299
consensus_2738#1      TTGAAGAAACGTTTTAAAGGCAAAAAAAAAGAAAGCGTTGCTCCCAACGGAAGATCAAAC 128
                       **   *** ** * *** * **    **  ***      *    ** *    *  ****

consensus_2738#0      TGTGTGTATGCCTAGTGTTGTAGAGTGTGTAATGTGAAAACACACACACAAAACAAAACA 359
consensus_2738#1      ACCTTTTTTTCTTAGTTTGAT------TGGAAAGGGGAAACA---------AATGAAACG 173
                          * * * * **** *  *      ** ** * * *****         **  **** 

consensus_2738#0      CAAAAACTNAATAAACAATACGATACGTTGTAAGATATTGGTATAGAAGTTGTTGTTGTT 419
consensus_2738#1      AAAGCACTTAAGAAGCAGCA-GCTAATTTCTTA-ACCCCGAAAACGACAAGCCTATCAC- 230
                       **  *** ** ** **  * * **  ** * * *    *  *  **      * *    

consensus_2738#0      GTTGTGCTGAAGAAGTTGCTAATATATAAATAATTATAACATTAACATTATAACACTTAT 479
consensus_2738#1      GACCCGCTGCGTACGTGCCGGATGGAACAGT--TTATAGCTCATTTACTGTGAAAC---- 284
                      *    ****   * **  *  **  *  * *  ***** *      * * * * **    

consensus_2738#0      TATATNAATAACCACTACTTACNCCGTCTCAANTTGTAGTACTAANCATNTCCTCACTCC 539
consensus_2738#1      -AAAAGAACAAA-ACCATTTAAA-----TCAAATTATAA----AGTCTAGAGCGGAGAGC 333
                       * *  ** **  ** * ***       **** ** **     *  *     *  *   *

consensus_2738#0      CAATATCTNCCATGCCAAAAACCCCACNTAAAACCCCCCAATGCANGTGCTAAAAGCAAT 599
consensus_2738#1      CGAGAGCCACAGAAC--AGGAGCAGAGTAAAGAAAATGGAATGGAAAAGTGGAGAGTAAC 391
                      * * * *  *    *  *  * *  *   ** *      **** *   *   * ** ** 

consensus_2738#0      GTATC-CGCACACGCACANACGCNTTNCACACNCCACCCCAGCCAGCAGAAGACAAATAA 658
consensus_2738#1      GCACAATTCACACATAAAAAGGTAAGAAACGCGGTAGCCTAGTGTGTAGAGTGGTAAGG- 450
                      * *     *****  * * * *      ** *   * ** **   * ***     **   

consensus_2738#0      TGAACTCAAAACAANGTAAGAAAAACATTAAAACAAAACCAAACACNTTACACNAACAAC 718
consensus_2738#1      ------------------------------------------------------------
                                                                                  

consensus_2738#0      AGGTACCCCCCACACGCCTACCAACACCCCACTCGACACACCANCACAACACCAGNGCNN 778
consensus_2738#1      ------------------------------------------------------------
                                                                                  

consensus_2738#0      CACANNNACTGCAACGCGTGGACCANACNCCNG 811
consensus_2738#1      ---------------------------------
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)