These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2741#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence [CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTCGGACGAAAGTCCACCTCGAAGGGGAAGATCGAAAGAGAAGGAAGTGTCAAAAAAAAAGAGCGCACGGAAAAACAATGCAGCATAGTGATTTCCCTACCATGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCGCGCACCGATAGAGAGATGACGATGATGATGATGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGAGACTGCCCAAGACTAGGGGAGAGAACGAAAAAAATAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCAAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCTGCGCACCTGTTGTTTATCAAAACAGCTTGTAACGTTGTGTTTAGATTTT] [+] EMBL BX622037 [CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTCGGACGAAAGTCCACCTCGAAGGGGAAGATCGAAAGAGAAGGAAGTGTCAAAAAAAAAGAGCGCACGGAAAAACAATGCAGCATAGTGATTTCCCTACCATGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCGCGCACCGATAGAGAGATGACGATGATGATGATGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGAGACTGCCCAAGACTAGGGGAGAGAACGAAAAAAATAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCAAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCTGCGCACCTGTTGTTTATCAAAACAGCTTGTAACGTTGTGTTTAGATTTT] consensusID : consensus_2741#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTACCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGCCCAAGACTAGGGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCCAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCT] [+] EMBL BX622886 [GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTACCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGCCCAAGACTAGGGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCCAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2741#0 ------------CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTC 48 consensus_2741#1 GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTA 60 * * * * **** *** * * ** * * ** consensus_2741#0 GGACGAAAGTCCACCTCGAAGGGGAAGATCGAAAGAGAAG-----GAAGTGTCAAAAAAA 103 consensus_2741#1 CCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCAC 120 *** * * ** ** ** * * * ** ** **** * * consensus_2741#0 AAGAGCGCACGGAAAA--ACAATGCAGCATAGTGATTT-CCCTACCATGCTCGCTATAAA 160 consensus_2741#1 ATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAA 180 * * * *** * ** * * ** *** * ** ************ consensus_2741#0 TAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAG 220 consensus_2741#1 TAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAG 240 ************************************************* ********** consensus_2741#0 TTGCAGTCCCAGCCAGCACCGAACCCAATCGCGCACCGATAGAGAGATGACGATGATGAT 280 consensus_2741#1 TTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGAT 300 ****************************** ***************************** consensus_2741#0 GATGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGT 340 consensus_2741#1 GATG------------GTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAG- 347 **** ******************************************* consensus_2741#0 GAGACTGCCCAAGACTAGGGGAGAGAACGAAAAAAATAA-CAAAAATAACACTAACATGC 399 consensus_2741#1 -----TGCCCAAGACTAGGGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGC 402 ******************************* ** ******************** consensus_2741#0 ACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATA 459 consensus_2741#1 ACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATA 462 ************************************************************ consensus_2741#0 GAAAGAGGATGAATGAACAAAAAAAA--GAAGGCATCACCCTCTGGTGTCATACGCACGT 517 consensus_2741#1 GAAAGAGGATGAATGAACAAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGT 522 ************************** ******************************** consensus_2741#0 GCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTC 577 consensus_2741#1 GCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTC 582 ************************************************************ consensus_2741#0 GGTGGATGGCAAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACG 637 consensus_2741#1 GGTGGATGGCCAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCG 642 ********** ********************************************** ** consensus_2741#0 CTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTC 697 consensus_2741#1 CTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTC 702 ************************************************************ consensus_2741#0 CGCTGCGCACCTGTTGTTTATCAAAACAGCTTGTAACGTTGTGTTTAGATTTT 750 consensus_2741#1 CGCT------------------------------------------------- 706 **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||