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Anopheles gambiae
cluster # 2779 cluster # 2779       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2779#0 length = 817 sequences # 1  
consensus_2779#1 length = 623 sequences # 1  

consensusID : consensus_2779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence
                              [CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCCCCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGAAAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCTTGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGAATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGGGATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCATCTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTCTCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGGGCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAATTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTGATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGGTTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA]

[+] EMBL AL932908             [CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCCCCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGAAAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCTTGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGAATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGGGATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCATCTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTCTCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGGGCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAATTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTGATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGGTTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA]


>consensus_2779#0 CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCC CCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGA AAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCT TGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGA ATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGG GATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCAT CTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA AGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTC TCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGG GCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCG TGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAA TTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTG ATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGG TTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA



consensusID : consensus_2779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATAGCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACGCTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACCTACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGGCCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTGGGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTGGTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC]

[+] EMBL BX616529             [AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATAGCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACGCTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACCTACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGGCCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTGGGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTGGTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC]


>consensus_2779#1 AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATA GCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACG CTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGC ATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACC TACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGG CCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATT CTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTG GGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTG GTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGA GAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATC ATCAACTGAATGGTGAAGCTCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2779#0      CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCC 60
consensus_2779#1      ------------------------------------------------------------
                                                                                  

consensus_2779#0      CCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGA 120
consensus_2779#1      ------------------------------------------------------------
                                                                                  

consensus_2779#0      AAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCT 180
consensus_2779#1      ------------------------------------------------------------
                                                                                  

consensus_2779#0      TGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGA 240
consensus_2779#1      --------AAAGTGCT------AGATAAGCAACGCAGCTCT-TCGGCGCTTCAGA--GGA 43
                              ********      *   ***   *    **** *************   **

consensus_2779#0      ATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGG 300
consensus_2779#1      ATCT--GGTC-TATCC--GATAGCG--ATGCTGCTAT---TGC-TGATA--CTAACCGGC 90
                      ****  * ** *****   *****   ****     *   *** ****     ****** 

consensus_2779#0      GATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCAT 360
consensus_2779#1      A--TTACGGTGC---TGCTGGTC---GTGCAGAACACG-CTCGA-GCTGCTGATCGGCAT 140
                         **** ****   *  *****   * *** ****** ****  ***************

consensus_2779#0      CTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA 420
consensus_2779#1      C--AAGGCAGTGCCATTG--AGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA 196
                      *  ***************   ***************************************

consensus_2779#0      AGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTC 480
consensus_2779#1      AGCTGGGACCGC-TGGGTGCCACGCTGGAGGTGT-GCATT-ATCACCTAC-CTAGGCGTC 252
                      ************ ********************* ***** ********* *********

consensus_2779#0      TCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGG 540
consensus_2779#1      --ACGTCCACC----GTCGGGCTCTACACGATG-CCG---TTCATGCGTAACGTGC--GG 300
                        *******          ************** ***   ***************   **

consensus_2779#0      GCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCG 600
consensus_2779#1      CCCCAGCGGCGC----AACACATC-ACTGGC-GCAG-CTGATAG-CAAACTGTGGCCTCG 352
                       *****  * **    ******** *****  **** ******* ***************

consensus_2779#0      TGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAA 660
consensus_2779#1      TGCTTATTCTTAGCTCT-GCGCTACC-ACTGCTT-GCGCGTATTCT--AGGTATTACAAA 407
                      ***************** ******** ******* ******* *    ************

consensus_2779#0      TTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTG 720
consensus_2779#1      TTT-CGATCT-GCT-GGGCGATTTCGGCCAGA-TCGAGTGG--CTCGGCAACTTT--CTG 459
                      *** ****** *** ***************** ********   ********* *  ***

consensus_2779#0      ATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGG 780
consensus_2779#1      ATCGTGCTGCTGTA-CAACGTGG-TGTTC-GGCAC--GGCGG-CCACGCTCT--GCCTG- 510
                      ************** ******** ***** *****  ***** *******    ***** 

consensus_2779#0      TTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA----------------------- 817
consensus_2779#1      TTCA---ACAAGTTCACC--GCGACCG-TGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAG 564
                      ****   ***********  ******* *** ***                         

consensus_2779#0      -----------------------------------------------------------
consensus_2779#1      AATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC 623
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)