|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence
[CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCCCCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGAAAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCTTGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGAATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGGGATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCATCTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTCTCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGGGCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAATTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTGATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGGTTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA]
[+] EMBL AL932908 [CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCCCCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGAAAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCTTGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGAATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGGGATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCATCTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTCTCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGGGCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAATTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTGATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGGTTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA]
consensusID : consensus_2779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATAGCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACGCTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACCTACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGGCCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTGGGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTGGTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC]
[+] EMBL BX616529 [AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATAGCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACGCTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACCTACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGGCCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTGGGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTGGTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2779#0 CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCC 60
consensus_2779#1 ------------------------------------------------------------
consensus_2779#0 CCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGA 120
consensus_2779#1 ------------------------------------------------------------
consensus_2779#0 AAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCT 180
consensus_2779#1 ------------------------------------------------------------
consensus_2779#0 TGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGA 240
consensus_2779#1 --------AAAGTGCT------AGATAAGCAACGCAGCTCT-TCGGCGCTTCAGA--GGA 43
******** * *** * **** ************* **
consensus_2779#0 ATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGG 300
consensus_2779#1 ATCT--GGTC-TATCC--GATAGCG--ATGCTGCTAT---TGC-TGATA--CTAACCGGC 90
**** * ** ***** ***** **** * *** **** ******
consensus_2779#0 GATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCAT 360
consensus_2779#1 A--TTACGGTGC---TGCTGGTC---GTGCAGAACACG-CTCGA-GCTGCTGATCGGCAT 140
**** **** * ***** * *** ****** **** ***************
consensus_2779#0 CTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA 420
consensus_2779#1 C--AAGGCAGTGCCATTG--AGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA 196
* *************** ***************************************
consensus_2779#0 AGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTC 480
consensus_2779#1 AGCTGGGACCGC-TGGGTGCCACGCTGGAGGTGT-GCATT-ATCACCTAC-CTAGGCGTC 252
************ ********************* ***** ********* *********
consensus_2779#0 TCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGG 540
consensus_2779#1 --ACGTCCACC----GTCGGGCTCTACACGATG-CCG---TTCATGCGTAACGTGC--GG 300
******* ************** *** *************** **
consensus_2779#0 GCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCG 600
consensus_2779#1 CCCCAGCGGCGC----AACACATC-ACTGGC-GCAG-CTGATAG-CAAACTGTGGCCTCG 352
***** * ** ******** ***** **** ******* ***************
consensus_2779#0 TGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAA 660
consensus_2779#1 TGCTTATTCTTAGCTCT-GCGCTACC-ACTGCTT-GCGCGTATTCT--AGGTATTACAAA 407
***************** ******** ******* ******* * ************
consensus_2779#0 TTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTG 720
consensus_2779#1 TTT-CGATCT-GCT-GGGCGATTTCGGCCAGA-TCGAGTGG--CTCGGCAACTTT--CTG 459
*** ****** *** ***************** ******** ********* * ***
consensus_2779#0 ATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGG 780
consensus_2779#1 ATCGTGCTGCTGTA-CAACGTGG-TGTTC-GGCAC--GGCGG-CCACGCTCT--GCCTG- 510
************** ******** ***** ***** ***** ******* *****
consensus_2779#0 TTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA----------------------- 817
consensus_2779#1 TTCA---ACAAGTTCACC--GCGACCG-TGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAG 564
**** *********** ******* *** ***
consensus_2779#0 -----------------------------------------------------------
consensus_2779#1 AATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC 623
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||