These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCCCCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGAAAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCTTGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGAATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGGGATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCATCTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTCTCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGGGCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAATTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTGATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGGTTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA] [+] EMBL AL932908 [CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCCCCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGAAAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCTTGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGAATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGGGATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCATCTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTCTCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGGGCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAATTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTGATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGGTTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA] consensusID : consensus_2779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATAGCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACGCTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACCTACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGGCCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTGGGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTGGTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC] [+] EMBL BX616529 [AAAGTGCTAGATAAGCAACGCAGCTCTTCGGCGCTTCAGAGGAATCTGGTCTATCCGATAGCGATGCTGCTATTGCTGATACTAACCGGCATTACGGTGCTGCTGGTCGTGCAGAACACGCTCGAGCTGCTGATCGGCATCAAGGCAGTGCCATTGAGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGAAGCTGGGACCGCTGGGTGCCACGCTGGAGGTGTGCATTATCACCTACCTAGGCGTCACGTCCACCGTCGGGCTCTACACGATGCCGTTCATGCGTAACGTGCGGCCCCAGCGGCGCAACACATCACTGGCGCAGCTGATAGCAAACTGTGGCCTCGTGCTTATTCTTAGCTCTGCGCTACCACTGCTTGCGCGTATTCTAGGTATTACAAATTTCGATCTGCTGGGCGATTTCGGCCAGATCGAGTGGCTCGGCAACTTTCTGATCGTGCTGCTGTACAACGTGGTGTTCGGCACGGCGGCCACGCTCTGCCTGTTCAACAAGTTCACCGCGACCGTGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAGAATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2779#0 CCCCGAGGTTTAGTTACAACGAATAGAACCTAAATGCCTGGTCAACACATTGTGGTCCCC 60 consensus_2779#1 ------------------------------------------------------------ consensus_2779#0 CCGGGGGACTACTNTGTGGTTCACAATCCTAAACACCNCCCCNTGTGGGAGCCCACACGA 120 consensus_2779#1 ------------------------------------------------------------ consensus_2779#0 AAGCGGAAATCGGTCCAAGGCCTGGTTGGACACNACNTTGGNAAAAAGNTTACGAAGTCT 180 consensus_2779#1 ------------------------------------------------------------ consensus_2779#0 TGAACCGTAAAGTGCTTAGATAAAGCAAGNGGCANGNCTCTCTCGGCGCTTCAGACAAGA 240 consensus_2779#1 --------AAAGTGCT------AGATAAGCAACGCAGCTCT-TCGGCGCTTCAGA--GGA 43 ******** * *** * **** ************* ** consensus_2779#0 ATCTTGGATCGTATCCCGCATAGCAGCATGCGAGCGTATATGCGTGATTACTNAACCGGG 300 consensus_2779#1 ATCT--GGTC-TATCC--GATAGCG--ATGCTGCTAT---TGC-TGATA--CTAACCGGC 90 **** * ** ***** ***** **** * *** **** ****** consensus_2779#0 GATTTACNGTGCGTGTCGTGGTCTGTGNGCAAAACACGGCTCGNAGCTGCTGATCGGCAT 360 consensus_2779#1 A--TTACGGTGC---TGCTGGTC---GTGCAGAACACG-CTCGA-GCTGCTGATCGGCAT 140 **** **** * ***** * *** ****** **** *************** consensus_2779#0 CTCAAGGCAGTGCCATTGGAGGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA 420 consensus_2779#1 C--AAGGCAGTGCCATTG--AGCACCAGGCAATTTACACTCGGCATCACTTCCCTATCGA 196 * *************** *************************************** consensus_2779#0 AGCTGGGACCGCCTGGGTGCCACGCTGGAGGTGTAGCATTTATCACCTACACTAGGCGTC 480 consensus_2779#1 AGCTGGGACCGC-TGGGTGCCACGCTGGAGGTGT-GCATT-ATCACCTAC-CTAGGCGTC 252 ************ ********************* ***** ********* ********* consensus_2779#0 TCACGTCCANNCGATACGAGGCTCTACACGATGACCGGTCTTCATGCGTAACGTGGCGGG 540 consensus_2779#1 --ACGTCCACC----GTCGGGCTCTACACGATG-CCG---TTCATGCGTAACGTGC--GG 300 ******* ************** *** *************** ** consensus_2779#0 GCCCAGGCGGGCGACAAACACATCCACTGGNCGCAGGCTGATAGGCAAACTGTGGCCTCG 600 consensus_2779#1 CCCCAGCGGCGC----AACACATC-ACTGGC-GCAG-CTGATAG-CAAACTGTGGCCTCG 352 ***** * ** ******** ***** **** ******* *************** consensus_2779#0 TGCTTATTCTTAGCTCTTGCGCTACCCACTGCTTTGCGCGTAATNCTAAGGTATTACAAA 660 consensus_2779#1 TGCTTATTCTTAGCTCT-GCGCTACC-ACTGCTT-GCGCGTATTCT--AGGTATTACAAA 407 ***************** ******** ******* ******* * ************ consensus_2779#0 TTTTCGATCTTGCTAGGGCGATTTCGGCCAGAATCGAGTGGGCTTCGGCAACTNTTCCTG 720 consensus_2779#1 TTT-CGATCT-GCT-GGGCGATTTCGGCCAGA-TCGAGTGG--CTCGGCAACTTT--CTG 459 *** ****** *** ***************** ******** ********* * *** consensus_2779#0 ATCGTGCTGCTGTAACAACGTGGGTGTTCCGGCACCCGGCGGGCCACGCTTCTGGCCTGG 780 consensus_2779#1 ATCGTGCTGCTGTA-CAACGTGG-TGTTC-GGCAC--GGCGG-CCACGCTCT--GCCTG- 510 ************** ******** ***** ***** ***** ******* ***** consensus_2779#0 TTCAAACACAAGTTCACCCGGCGACCGGTGCNGCGNA----------------------- 817 consensus_2779#1 TTCA---ACAAGTTCACC--GCGACCG-TGCGGCGAGAGCTGTGTGCTCGGTTAGTGGAG 564 **** *********** ******* *** *** consensus_2779#0 ----------------------------------------------------------- consensus_2779#1 AATTATTTCATCTTTCTTAGCTACCTTACGTTCATCATCAACTGAATGGTGAAGCTCGC 623 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||