cluster # 278

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Anopheles gambiae
cluster # 278 cluster # 278 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_278#0 length = 650 sequences # 1

consensus_278#1 length = 531 sequences # 1

consensusID : consensus_278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGCTGCCTACTGAGTATTCTACCAACCTCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGCTACGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGCTCCCAGGACATCATGGCCAAGGAGAAGCGCAGCTACAGCTCGTCCTTCGAATCGCAGAGCATCTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTACCACTACAACCCGGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGACTTCACCCGCTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTTGAACACCACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACACATACGTAAAAAGATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGTTAGAAGGAAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTCCAACTGGTCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG]

[+] EMBL BM645534             [CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGCTGCCTACTGAGTATTCTACCAACCTCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGCTACGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGCTCCCAGGACATCATGGCCAAGGAGAAGCGCAGCTACAGCTCGTCCTTCGAATCGCAGAGCATCTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTACCACTACAACCCGGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGACTTCACCCGCTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTTGAACACCACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACACATACGTAAAAAGATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGTTAGAAGGAAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTCCAACTGGTCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG]




>consensus_278#0
CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGCTGCCTACTGAGTATTCTACCAACC
TCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGCTA
CGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGCTC
CCAGGACATCATGGCCAAGGAGAAGCGCAGCTACAGCTCGTCCTTCGAATCGCAGAGCAT
CTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTACCACTACAACCC
GGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGACTTCACCCG
CTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTTGAACAC
CACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACACATACGTAAAAAG
ATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGTTAGAAGG
AAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTCCAACTGG
TCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG

consensusID : consensus_278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGAGGGTGACGATGAGACGATCGCCGAGGTGGTGAAGCTGGTTGCGGACGGTATCAAGAGCGGTGCGGTGCGGCCCCTGCCGACGAGCGTGTTCACCGAGCAGCAGGTCGAGCAGGCTTTTCGCTTCATGGCTTCGGGTAAGCACATCGGCAAGGTGGTGGTACGCGTGCGCGAGGAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGAAGCTGATCAGCGCGATCCCGCGCACCTACATGCACGCCGAGAAGGTGTACATCCTGATCGGGGGGCTCGGCGGGTTCGGGCTGGAGCTGTCCAACTGGCTGGTTTCGCGCGGCGCCAAGATCATCGTGCTGACGTCGCGCAGCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGACGCTGGACGGAGCGAGGCGTGAAGGTGGTGATCGACACGAACGACGTAACGACGCTGAAGGGCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG]

[+] EMBL BM589127             [CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGAGGGTGACGATGAGACGATCGCCGAGGTGGTGAAGCTGGTTGCGGACGGTATCAAGAGCGGTGCGGTGCGGCCCCTGCCGACGAGCGTGTTCACCGAGCAGCAGGTCGAGCAGGCTTTTCGCTTCATGGCTTCGGGTAAGCACATCGGCAAGGTGGTGGTACGCGTGCGCGAGGAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGAAGCTGATCAGCGCGATCCCGCGCACCTACATGCACGCCGAGAAGGTGTACATCCTGATCGGGGGGCTCGGCGGGTTCGGGCTGGAGCTGTCCAACTGGCTGGTTTCGCGCGGCGCCAAGATCATCGTGCTGACGTCGCGCAGCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGACGCTGGACGGAGCGAGGCGTGAAGGTGGTGATCGACACGAACGACGTAACGACGCTGAAGGGCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG]




>consensus_278#1
CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGAGGGTGACGATGAGACGATCGCCGAGG
TGGTGAAGCTGGTTGCGGACGGTATCAAGAGCGGTGCGGTGCGGCCCCTGCCGACGAGCG
TGTTCACCGAGCAGCAGGTCGAGCAGGCTTTTCGCTTCATGGCTTCGGGTAAGCACATCG
GCAAGGTGGTGGTACGCGTGCGCGAGGAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGA
AGCTGATCAGCGCGATCCCGCGCACCTACATGCACGCCGAGAAGGTGTACATCCTGATCG
GGGGGCTCGGCGGGTTCGGGCTGGAGCTGTCCAACTGGCTGGTTTCGCGCGGCGCCAAGA
TCATCGTGCTGACGTCGCGCAGCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGAC
GCTGGACGGAGCGAGGCGTGAAGGTGGTGATCGACACGAACGACGTAACGACGCTGAAGG
GCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_278#0      CCGCGCACCACGAACAGTTGGCTATCCCGCAGCAGC-TGCCTACTGAGTATT-CTACCAA 58
consensus_278#1      --------------------------CCGCGGACGCGTGGGTGCTGGATAGCGTTATGGA 34
                                               **** *  ** **  * ***  **    **   *

consensus_278#0      CCTCAACAAAAACCAAATCAACCGAAGATGTTCAAGTCGCACCTGGAAATGATCGGAAGC 118
consensus_278#1      GGGTGACGATGAGACGATCGCC--GAGGTGGTGAAGCTGGTTGCGGACGGTATCAAGAGC 92
                          ** *  *    ***  *   ** ** * ***  *     ***    ***   ***

consensus_278#0      TACGAGCCCATCAGCAAGAAGGCTCGCTTCTTCAACACCTACCTTAAGTCGCTCAAGGGC 178
consensus_278#1      GGTGCGGTGCGGCCCCTGCCGACGAGCGTGTTCACCGAGCAGC--AGGTCGAGCAGGCTT 150
                        * *        *  *  * *  ** * **** *    * *  * ****  ** *   

consensus_278#0      TCCCAGGACATCATGGCCAAGGAGAAGCGCAGCTACA-GCTCGTCCTTCGAAT-CGCAGA 236
consensus_278#1      TTC----GCTTCATGGCTTCGGGTAAGCACATCGGCAAGGTGGTGGTACGCGTGCGCGAG 206
                     * *     * *******   **  **** ** *  ** * * **  * **  * ***   

consensus_278#0      GCATCTACAGTGACTCGAAATTCGCCTGCGAAAGAGTCAAGTCGCCCGGCTAC-CACTAC 295
consensus_278#1      GAAGAGAAGGCGAAGATTGTGCAGCCGGCGCCGAAGCTGATCAGCGCGATCCCGCGCACC 266
                     * *   *  * **          *** ***    **   *   ** **    * * *  *

consensus_278#0      AACCCGGTCAGCAAGGACACCTATGGCGTTACGCCGAGAAAGATCAATGCACGCGA-CTT 354
consensus_278#1      TACATGCACGCCGAGAAGGTGTA---CATCCTGATCGGGGGGCTCGGCGGGTTCGGGCTG 323
                      **  *  *  * ** *    **   * *   *    *   * **   *    **  ** 

consensus_278#0      CACCCGCTAAACATCGTGTAGCAATAATATCTTTTTGTCTTAATGTGTCCCTAAGTTCTT 414
consensus_278#1      GAGCTGTCCAAC------TGGC--TGGTTTCGCGCGGCGCCAAGATCATC----GTGCT- 370
                      * * *   ***      * **  *  * **     *    **  *   *    ** ** 

consensus_278#0      GAACACCACACAAGAAGAGAAAAAACAACACCTAACCTACACATACACACACAC-ATACG 473
consensus_278#1      -GACGTCGCGCA-GCGGCGTGCGCACGGGCTATCAGTCGCTCATGATCCGACGCTGGACG 428
                       **  * * ** *  * *     **      * *    * ***   *  ** *   ***

consensus_278#0      TAAAAAGATATACAGCCTAACACCTTTGTTATCTTTGAGACGAGACAACAACAACAACGT 533
consensus_278#1      GAGCGAGGCGTGAAGGTGGTGATCGACACGA--------ACGACGTAACGACGCTGAAGG 480
                      *   **   *  **      * *      *        ****   *** **    * * 

consensus_278#0      TAGAAGGAAGAGAGAGCGAGGAATGCAGCGCGGGGATGTCCCGATGCCGCGTGACTCCTC 593
consensus_278#1      GCGCCCCAGAAGCTGCTGACGGACGCGGCCCGGCACGGCCCGGTCGGCGGG--------- 531
                       *    *  **     ** * * ** ** ***    * ** *  * ** *         

consensus_278#0      CAACTGGTCATTATGTCCAACAATCCCACACATAAGGTGTATTTTGTATATAAATAG 650
consensus_278#1      ---------------------------------------------------------