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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 282 cluster # 282       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_282#0 length = 756 sequences # 1  
consensus_282#1 length = 189 sequences # 1  

consensusID : consensus_282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence
                              [GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCGATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGAAAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTTTCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTGCTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGGTTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTACTGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCTTATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCTGGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACACACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACGATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTTAGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCNGCCGGNGCCCAGGGACCACGGACGCAACGACGACCG]

[+] EMBL AL934428             [GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCGATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGAAAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTTTCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTGCTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGGTTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTACTGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCTTATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCTGGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACACACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACGATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTTAGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCNGCCGGNGCCCAGGGACCACGGACGCAACGACGACCG]


>consensus_282#0 GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCG ATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGA AAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTT TCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTG CTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGG TTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTAC TGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCT TATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCT GGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACA CACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACG ATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTT AGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCN GCCGGNGCCCAGGGACCACGGACGCAACGACGACCG



consensusID : consensus_282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence
                              [GTGACCAAACTGAGGAATAAAGCACAACATTTAAAGTAGGGAATCGGTTGGCAGATAGGAGCCTCCCTCTCGAAGAACCTCAAAACAAAGAGGAAAACAAGAGAACAAAGGTTCCACGATTTGGAAGAACAAACTAGCGAATAGAGAGAGAGCAAGGAAGAGGAAGCGCACGTCTAAAGCGCGAAGAGA]

[+] EMBL BX608080             [GTGACCAAACTGAGGAATAAAGCACAACATTTAAAGTAGGGAATCGGTTGGCAGATAGGAGCCTCCCTCTCGAAGAACCTCAAAACAAAGAGGAAAACAAGAGAACAAAGGTTCCACGATTTGGAAGAACAAACTAGCGAATAGAGAGAGAGCAAGGAAGAGGAAGCGCACGTCTAAAGCGCGAAGAGA]


>consensus_282#1 GTGACCAAACTGAGGAATAAAGCACAACATTTAAAGTAGGGAATCGGTTGGCAGATAGGA GCCTCCCTCTCGAAGAACCTCAAAACAAAGAGGAAAACAAGAGAACAAAGGTTCCACGAT TTGGAAGAACAAACTAGCGAATAGAGAGAGAGCAAGGAAGAGGAAGCGCACGTCTAAAGC GCGAAGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_282#0      GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCG 60
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      ATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGA 120
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      AAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTT 180
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      TCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTG 240
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      CTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGG 300
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      TTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTAC 360
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      TGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCT 420
consensus_282#1      -----------------------GTGACCAAAC-TGAGGAATAAAGCACAACA------T 30
                                             * **  *   ***** *** **  *** *      *

consensus_282#0      TATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCT 480
consensus_282#1      TTAAAGTAGG--GAATCGGTTGGCAGATAGGAGCCTCCCTCTC---GAAGAACCTCAAAA 85
                     *  ****  *   ***    **  *  *  **   *  **  *    *    * **    

consensus_282#0      GGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACA 540
consensus_282#1      CAAAGAGGAAAACAAGAGAACAAAGGTTCCACGATTTGGAAGAACAAACTAGCGAATAGA 145
                        * **  * ***  *  *** *    * * **    **   *** *    *  * * *

consensus_282#0      CACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACG 600
consensus_282#1      GAGAGA-----GCAAGGAAGAGGAAGCGCACGTCTAAAGCGCGAAGAGA----------- 189
                      * * *     **** ***        ***      ****     *  *           

consensus_282#0      ATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTT 660
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      AGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCN 720
consensus_282#1      ------------------------------------------------------------
                                                                                 

consensus_282#0      GCCGGNGCCCAGGGACCACGGACGCAACGACGACCG 756
consensus_282#1      ------------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)