cluster # 2831

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Anopheles gambiae
cluster # 2831 cluster # 2831 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2831#0 length = 557 sequences # 1

consensus_2831#1 length = 498 sequences # 1

consensusID : consensus_2831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CGCCACGAGGTGCAAGCAGTGCCCGAAGGTGTTCATGACCAATGCGGCCTTCGAGCATCACCAGTACTGTCACGCGACGGGGCGTTCGTTTTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTGCTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGGCAGGAGTTTAGCAATCGGAGCAATCTGCGCCAGCACCTGATACGGCACACGGGTGAGAAGCCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTAGACAGACATATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGCCGGCACTATTCGTTGGTAAAGCATCAACTAATCCACACAGGAGATCGTCACTTTACCTGTGAGGTTTGCAGTATGCGATTCACCTCGAGCCACCACGTGAAACGGNACATGCTTACACACACCGGCGAGAAACCGTTCAAATGCACATACTGTGAGCGCAGCTTCACGCAAAGCAACGACATGG]

[+] EMBL AL932491             [CGCCACGAGGTGCAAGCAGTGCCCGAAGGTGTTCATGACCAATGCGGCCTTCGAGCATCACCAGTACTGTCACGCGACGGGGCGTTCGTTTTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTGCTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGGCAGGAGTTTAGCAATCGGAGCAATCTGCGCCAGCACCTGATACGGCACACGGGTGAGAAGCCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTAGACAGACATATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGCCGGCACTATTCGTTGGTAAAGCATCAACTAATCCACACAGGAGATCGTCACTTTACCTGTGAGGTTTGCAGTATGCGATTCACCTCGAGCCACCACGTGAAACGGNACATGCTTACACACACCGGCGAGAAACCGTTCAAATGCACATACTGTGAGCGCAGCTTCACGCAAAGCAACGACATGG]




>consensus_2831#0
CGCCACGAGGTGCAAGCAGTGCCCGAAGGTGTTCATGACCAATGCGGCCTTCGAGCATCA
CCAGTACTGTCACGCGACGGGGCGTTCGTTTTTCTGCATGTTTTGCGACAAAGGCTTTCA
GACGGAGCAGCTGCTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTG
CTCGCACTGTGGGCAGGAGTTTAGCAATCGGAGCAATCTGCGCCAGCACCTGATACGGCA
CACGGGTGAGAAGCCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTA
CCTAGACAGACATATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGG
GTCACAATTTAGCCGGCACTATTCGTTGGTAAAGCATCAACTAATCCACACAGGAGATCG
TCACTTTACCTGTGAGGTTTGCAGTATGCGATTCACCTCGAGCCACCACGTGAAACGGNA
CATGCTTACACACACCGGCGAGAAACCGTTCAAATGCACATACTGTGAGCGCAGCTTCAC
GCAAAGCAACGACATGG

consensusID : consensus_2831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [GAACCGAAAACGAAGGTCGACCTGTACCGCTGTCTGCTGTGCGATGCACCGACCTACACCTCGCCGAAGGAGCACACCGACCATCTGCTGAAGGAACATCCGGACCAGATACATTGCTGCAAGCAGTGCCCGAAGGTGTTCATGACCAAGGCGGCCTTCGAGCATCACCAGTACTGTCACGCGACGGGGCGTTCGTTCTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTGCTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGGCAGGAGTTTAGCAATCGGAGCAATCTGCGCCAACACTTGATACGGCACACGGGTGAGAAGCCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTGGACAGACATATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGCCGACACTATTCGTTGGTG]

[+] EMBL BX628210             [GAACCGAAAACGAAGGTCGACCTGTACCGCTGTCTGCTGTGCGATGCACCGACCTACACCTCGCCGAAGGAGCACACCGACCATCTGCTGAAGGAACATCCGGACCAGATACATTGCTGCAAGCAGTGCCCGAAGGTGTTCATGACCAAGGCGGCCTTCGAGCATCACCAGTACTGTCACGCGACGGGGCGTTCGTTCTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTGCTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGGCAGGAGTTTAGCAATCGGAGCAATCTGCGCCAACACTTGATACGGCACACGGGTGAGAAGCCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTGGACAGACATATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGCCGACACTATTCGTTGGTG]




>consensus_2831#1
GAACCGAAAACGAAGGTCGACCTGTACCGCTGTCTGCTGTGCGATGCACCGACCTACACC
TCGCCGAAGGAGCACACCGACCATCTGCTGAAGGAACATCCGGACCAGATACATTGCTGC
AAGCAGTGCCCGAAGGTGTTCATGACCAAGGCGGCCTTCGAGCATCACCAGTACTGTCAC
GCGACGGGGCGTTCGTTCTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTG
CTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGG
CAGGAGTTTAGCAATCGGAGCAATCTGCGCCAACACTTGATACGGCACACGGGTGAGAAG
CCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTGGACAGACAT
ATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGC
CGACACTATTCGTTGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2831#0      ------------------------------------------------------------
consensus_2831#1      GAACCGAAAACGAAGGTCGACCTGTACCGCTGTCTGCTGTGCGATGCACCGACCTACACC 60
                                                                                  

consensus_2831#0      ----------------------------------------------CGCCACGAGG-TGC 13
consensus_2831#1      TCGCCGAAGGAGCACACCGACCATCTGCTGAAGGAACATCCGGACCAGATACATTGCTGC 120
                                                                     *  **   * ***

consensus_2831#0      AAGCAGTGCCCGAAGGTGTTCATGACCAATGCGGCCTTCGAGCATCACCAGTACTGTCAC 73
consensus_2831#1      AAGCAGTGCCCGAAGGTGTTCATGACCAAGGCGGCCTTCGAGCATCACCAGTACTGTCAC 180
                      ***************************** ******************************

consensus_2831#0      GCGACGGGGCGTTCGTTTTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTG 133
consensus_2831#1      GCGACGGGGCGTTCGTTCTTCTGCATGTTTTGCGACAAAGGCTTTCAGACGGAGCAGCTG 240
                      ***************** ******************************************

consensus_2831#0      CTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGG 193
consensus_2831#1      CTGAAGAACCACATGCGGACGCATACGCACGGGACCGGGTTCCTGTGCTCGCACTGTGGG 300
                      ************************************************************

consensus_2831#0      CAGGAGTTTAGCAATCGGAGCAATCTGCGCCAGCACCTGATACGGCACACGGGTGAGAAG 253
consensus_2831#1      CAGGAGTTTAGCAATCGGAGCAATCTGCGCCAACACTTGATACGGCACACGGGTGAGAAG 360
                      ******************************** *** ***********************

consensus_2831#0      CCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTAGACAGACAT 313
consensus_2831#1      CCGTGGCAGTGTAATCTGTGCCCGAGTCGTTTCAGTATGAAGAGTTACCTGGACAGACAT 420
                      ************************************************** *********

consensus_2831#0      ATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGC 373
consensus_2831#1      ATGCACACCCACACGAAAGCCAAGTTTTTCAGCTGCGACACGTGTGGGTCACAATTTAGC 480
                      ************************************************************

consensus_2831#0      CGGCACTATTCGTTGGTAAAGCATCAACTAATCCACACAGGAGATCGTCACTTTACCTGT 433
consensus_2831#1      CGACACTATTCGTTGGTG------------------------------------------ 498
                      ** **************                                           

consensus_2831#0      GAGGTTTGCAGTATGCGATTCACCTCGAGCCACCACGTGAAACGGNACATGCTTACACAC 493
consensus_2831#1      ------------------------------------------------------------
                                                                                  

consensus_2831#0      ACCGGCGAGAAACCGTTCAAATGCACATACTGTGAGCGCAGCTTCACGCAAAGCAACGAC 553
consensus_2831#1      ------------------------------------------------------------
                                                                                  

consensus_2831#0      ATGG 557
consensus_2831#1      ----