These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCACGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGCGCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCTACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGTCCCTCTCTCCTTCTCTCTCGCTACCTGTTGTGACCTAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCG] [+] EMBL BM577742 [CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCACGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGCGCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCTACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGTCCCTCTCTCCTTCTCTCTCGCTACCTGTTGTGACCTAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCG] consensusID : consensus_2834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCGTCGTCCTAATTCTCGTCTGTCTGGTGGTGGCATGGGCCCTCGCCAATATCGGCCTCTATGGACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTGGCGGCGACGCTTGAAAGGGCCGCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTGGGCTGGGCATTACGATACGGGGGCGGCAGGCGAGT] [+] EMBL BM589508 [CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCGCGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTCTGCGCCCGTGTGCCGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCCGGGCGTGACAATTGTGTGCGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAATCAACCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAGACAGCACTGCTGACGGTGATACTGCTGCCATTTCGCGTCGTCCTAATTCTCGTCTGTCTGGTGGTGGCATGGGCCCTCGCCAATATCGGCCTCTATGGACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTGGCGGCGACGCTTGAAAGGGCCGCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTGGGCTGGGCATTACGATACGGGGGCGGCAGGCGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2834#0 CCGGGCAGCCGAAGCAGAAGCTGCCGACCGAAATCGAGCACACGCGCGCTGAAACGTTCG 60 consensus_2834#1 -------------CCGCCACGCGTCCGCCGAAATCGAGCACACGCGCGCTGAAACGTTCG 47 * * * * ********************************* consensus_2834#0 CGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTC 120 consensus_2834#1 CGTTCGAAGGAAATCGCATCAACCTCGCGTCGCACAGCCCATTCCGGCGTGCTTTGCCTC 107 ************************************************************ consensus_2834#0 TGCGCCCGTGTGCCGTGTGTATGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCA 180 consensus_2834#1 TGCGCCCGTGTGCCGTGTGTGTGTGTGTGCACGTTCGCGAAAGCATCACCTAGAAGAGCC 167 ******************** ************************************** consensus_2834#0 CGCAGTGGAAGAAAACAACAACAAAACCGCGTGTTTGTTTGTGTGTGTGTGTGTGGGTGC 240 consensus_2834#1 GGGCGTG-------------ACAATTGTGTGCGCAGGGCAGTATG-GCGGCCACGGCCGA 213 * *** **** * * * * ** ** * * ** * consensus_2834#0 GCCAATTAATCCCCCCATCCCACCCGTTTCCCTCCCGCTAACAAACACACACACACACCT 300 consensus_2834#1 ATGGG---AGCCACCGGTGGCACCGGAAGCGGCCCCGGTGGCGCA-ACCGGAACGCAAGG 269 * ** ** * **** * * **** * * * ** ** ** consensus_2834#0 ACATTTTCCGGTCGTGTAGCGCCGTGTCCCAACTTTCCTTTGCTTCCCTTCTCGCCGCGT 360 consensus_2834#1 GGACGGCACCGGCGCCCGGCCCACCGGCCGCAATCAACCGGAAAGCGGAAAACAAT-CAA 328 * * * ** ** * * ** * * * * * * consensus_2834#0 CCCTCTCTCCTTCTCTCTCGCTACCTGTT-GTGACCTAGCCGGGC-GTGACAATTGTGTG 418 consensus_2834#1 CCGGACGAGATACACTACGTCAACCCGTTCGTGCACAAGCTCGTCTGGGACGATCCGATC 388 ** * * ** * *** *** *** * *** * * * *** ** * consensus_2834#0 CGCAGGGCAGTATGGCGGCCACGGCCGAATGGGAGCCACCGGTGGCACCGGAAGCGGCCC 478 consensus_2834#1 GACAAGGC--CAAGACAGC-ACTGCTGAC--GGTGATACTGCTGCCATTTCGCGTCGTCC 443 ** *** * * * ** ** ** ** ** * ** * ** ** * * ** consensus_2834#0 CGGTGGCGCAACCGGAACGCAAGGGGACGGCACCGGCGCCCGGCC-CACCGGCCGCAATC 537 consensus_2834#1 TAATT------CTCGTCTGTCTGGTGGTGGCATGGGCCCTCGCCAATATCGGCCTCTATG 497 * * * * ** * **** *** * ** * * ***** * ** consensus_2834#0 AACCGGAAAGCGGAAAACAATCAACCGGACGA--GATACACTA-CGTCAACCCGTTCGTG 594 consensus_2834#1 GACTGTCCAAGGAGGATCTGCGTACGAAGCCACTGGTCGGCTGGCGGCGACGCTTGAAAG 557 ** * * * * * ** * * * * ** ** * ** * * * consensus_2834#0 CACAAGCTCGTCTGGGACGATCCGATCGACAAGGCCAAG-ACAGCACTGCTGACGGTGAT 653 consensus_2834#1 GGCC-GCTCGGTGAGTTCGCCACGCTCGCGTACACCTGGCGCTGGGCTGGGCATTACGAT 616 * ***** * ** ** *** * ** * * * *** * *** consensus_2834#0 ACTGCTGCCATTTCGCG--- 670 consensus_2834#1 AC-GGGGGCGGCAGGCGAGT 635 ** * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||