These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAACCCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTTGGCGGACAGTCGAATCATCCCTGGCAGAAGCGACCG] [+] EMBL BM587775 [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAACCCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTTGGCGGACAGTCGAATCATCCCTGGCAGAAGCGACCG] consensusID : consensus_2836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAACGAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT] [+] EMBL BM650386 [CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAACGAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2836#0 -------------------------------CCGCCCACGCGT---CCGCCCACGCGTCC 26 consensus_2836#1 CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAAC 60 * * ** * ****** ** * consensus_2836#0 G--GCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCT 84 consensus_2836#1 GAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCT 120 * ********************************************************* consensus_2836#0 AAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATA 144 consensus_2836#1 AAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATA 180 ************************************************************ consensus_2836#0 CATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAACCCCAGTGTGTTGTCGG 204 consensus_2836#1 CATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGG 240 ******************************************* **************** consensus_2836#0 TGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGC 264 consensus_2836#1 TGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGC 300 ************************************************************ consensus_2836#0 ACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGG 324 consensus_2836#1 ACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGG 360 ************* ********************************************** consensus_2836#0 TGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGC 384 consensus_2836#1 TGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGC 420 ************************************************************ consensus_2836#0 AGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGT 444 consensus_2836#1 AGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGT 480 ************************************************************ consensus_2836#0 GACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCAC 504 consensus_2836#1 GACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCAC 540 ************************************************************ consensus_2836#0 CATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCC 564 consensus_2836#1 CATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCC 600 ************************************************************ consensus_2836#0 CGACAATTGTACGCTAACACCTAAAACCCAGCCGTTTGGCGGACAGTCGAATCATCCCTG 624 consensus_2836#1 CGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT----------------------- 637 ************************************* consensus_2836#0 GCAGAAGCGACCG 637 consensus_2836#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||