These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTATTACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCACCCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCCAGCTACAAAGGTAGATGAATCCAGTCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCGGGGGCAGTTTAATAACTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAAACAACCTTCCACCGGATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATGACGAATCGGCACAACAAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGTCAAGAAAGTACTACGATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCGCAATTTGTGTAGCGTGCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGGTGGGATTTGGTGCTCTTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAATTACAGGCCCTA] [+] EMBL BM587750 [CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTATTACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCACCCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCCAGCTACAAAGGTAGATGAATCCAGTCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCGGGGGCAGTTTAATAACTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAAACAACCTTCCACCGGATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATGACGAATCGGCACAACAAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGTCAAGAAAGTACTACGATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCGCAATTTGTGTAGCGTGCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGGTGGGATTTGGTGCTCTTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAATTACAGGCCCTA] consensusID : consensus_2848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CCGCCCACGCGTCCGTAAGTACGGCTACAATGCGCAACATATTCACACATTTAACAGTCGTGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTCCTATAAATTACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCTACGATCGACATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGGATCTCACTGTAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC] [+] EMBL BM638375 [CCGCCCACGCGTCCGTAAGTACGGCTACAATGCGCAACATATTCACACATTTAACAGTCGTGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTCCTATAAATTACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCTACGATCGACATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGGATCTCACTGTAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCGCGATCGGTTGGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2848#0 CCGCTCAGAGTGTAAAGATTCAAGAGATTTCGTTTACGCTTATGACGATGTTGGATCTAT 60 consensus_2848#1 -------CCGCCCACGCGTCCGTAAG--TACGGCTACAATGCGCAACATATTCACACATT 51 * * * * ** * ** *** * * ** ** * * consensus_2848#0 TACCAACTTTGCTATCGATAGCAAGTTTAGCCCGGGGATCAGATTTTTTAGATAATCCAC 120 consensus_2848#1 TAACAGTCGTGCTCACGTTAGCAAACATAGCTTTGGGACAACATTTTTTAGAACAACCTC 111 ** ** **** ** ****** **** **** * ********** * ** * consensus_2848#0 CCGTAAATTACACTACAGGAAAGAGTTTTGAAGATTGTGAGCTACGCTTCCC-------- 172 consensus_2848#1 CTATAAATTACACCGAAGGAAAGAACTTTGAAGACTGTGAGCTACGTTTCGTTACGAGCT 171 * ********** ******** ******** *********** *** consensus_2848#0 ------------------------AGCTACAAAGGTAGAT---GAATCCAG--------- 196 consensus_2848#1 ACGATCGACATGAGAGCGAGAGAAAATTACAGAGCTGGGTAACGAATATAGAGGTTATGG 231 * **** ** * * * **** ** consensus_2848#0 -TCATATTGAATCGTACGGTGGGGAACGAGCCTATAAAGGAGAGTTTCAACACATGGCCG 255 consensus_2848#1 ATCTCACTGTAGCGTACGGTGGGGTTCGAGCCTATAAGGGAGAGTTTCAACACATGGCCG 291 ** * ** * ************ *********** ********************** consensus_2848#0 CGATCGGTTGGACCAGATCAGGAGCAACAATCGATTACCTTTGCGGGGGCAGTTTAATAA 315 consensus_2848#1 CGATCGGTTGGACCAGATCAGGAGCAACGATCGATTACCTTTGTGGGGGC---------- 341 **************************** ************** ****** consensus_2848#0 CTTGGAGATTCGTTTTAACAGCTTCTCATTGTTCAGTTGACTCAAACAACCTTCCACCGG 375 consensus_2848#1 ------------------------------------------------------------ consensus_2848#0 ATACAGTACGATTGGGAGACACAGATCTCGCTAGCACGGATGATGACGAATCGGCACAAC 435 consensus_2848#1 ------------------------------------------------------------ consensus_2848#0 AAATTCCGATCGCACGCTTCATCAAACATCCACAGTATCGAGAGTCAAGAAAGTACTACG 495 consensus_2848#1 ------------------------------------------------------------ consensus_2848#0 ATATTGCAGTTGTAGAACTCGAGAAAAACGTTATACCAAACAGCGCAATTTGTGTAGCGT 555 consensus_2848#1 ------------------------------------------------------------ consensus_2848#0 GCGTATGGCGTGAACTGGAAGCTCCGGGAGATTTGTTGGACGCGGTGGGATTTGGTGCTC 615 consensus_2848#1 ------------------------------------------------------------ consensus_2848#0 TTGGGTTTGGAGAAAAGTTAAGCCCAACCCTGCAAAAAGTAAAATTACAGGCCCTA 671 consensus_2848#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||