These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCCCTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAAGGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGCGTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATTACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTAAACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGAAATACCAGAAGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGA] [+] EMBL BX614821 [TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCCCTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAAGGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGCGTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATTACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTAAACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGAAATACCAGAAGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGA] consensusID : consensus_2861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCAGAAGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAACTTAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAACTGT] [+] EMBL BM639987 [CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCAGAAGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAACTTAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2861#0 TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCC 60 consensus_2861#1 ------------------------------------------------------------ consensus_2861#0 CTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAA 120 consensus_2861#1 ------------------------------------------------------------ consensus_2861#0 GGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGC 180 consensus_2861#1 ------------------------------------------------------------ consensus_2861#0 GTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATT 240 consensus_2861#1 ------------------------------------------------------------ consensus_2861#0 ACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTA 300 consensus_2861#1 ------------------------------------------------------------ consensus_2861#0 AACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAG 360 consensus_2861#1 --CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAG 58 * ******************************************************* consensus_2861#0 AGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGA--AATACCA 418 consensus_2861#1 AGAGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCA 118 ********************** ****** ** ************ * * **** consensus_2861#0 GAAGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAA 478 consensus_2861#1 GAAGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAA 178 ******************** *************************************** consensus_2861#0 TCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGA 538 consensus_2861#1 TCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAA 238 ****************************************************** * consensus_2861#0 CAAAACAAGGAAGGTCATCGGCAA--ATTGAATGAAAGCAAATACTTTAAAGA-AAACAA 595 consensus_2861#1 TGAAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAA 298 *** * * * * * ** ****** ***** * * **** * * **** consensus_2861#0 TTGA-------------------------------------------------------- 599 consensus_2861#1 CTTAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAA 358 * * consensus_2861#0 ---- consensus_2861#1 CTGT 362 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||