cluster # 2861

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Anopheles gambiae
cluster # 2861 cluster # 2861 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2861#0 length = 599 sequences # 1

consensus_2861#1 length = 362 sequences # 1

consensusID : consensus_2861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCCCTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAAGGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGCGTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATTACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTAAACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGAAATACCAGAAGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGA]

[+] EMBL BX614821             [TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCCCTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAAGGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGCGTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATTACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTAAACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGAAATACCAGAAGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGA]




>consensus_2861#0
TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCC
CTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAA
GGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGC
GTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATT
ACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTA
AACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAG
AGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGAAATACCAGA
AGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATC
AGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGACA
AAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGA

consensusID : consensus_2861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCAGAAGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAACTTAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAACTGT]

[+] EMBL BM639987             [CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCAGAAGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAATGAAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAACTTAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAACTGT]




>consensus_2861#1
CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAGAG
AGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCAGA
AGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAATC
AGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAATG
AAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAACT
TAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAACT
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2861#0      TTACGCGAGAGAACTCTACAACCACTCTCCGTCTCTCGAATTCATAAGCTACAACCCTCC 60
consensus_2861#1      ------------------------------------------------------------
                                                                                  

consensus_2861#0      CTTACAATCAACGATGTTCGAAGAGAATGGAACAATTTAGCTTCATTATAATTCAACTAA 120
consensus_2861#1      ------------------------------------------------------------
                                                                                  

consensus_2861#0      GGACAAAATTAACTCGACACAAATCTTTAGCAGCTATACATAAGAAGGCATTATAAAGGC 180
consensus_2861#1      ------------------------------------------------------------
                                                                                  

consensus_2861#0      GTATAAAACCACAACTATAATTCATATTATCTATACTATTCAACGCAAACTATTAACATT 240
consensus_2861#1      ------------------------------------------------------------
                                                                                  

consensus_2861#0      ACTTTGTAATACTACGAACATTTACTATGAAGGAAAGATAGGAATTGCTAACGGAACCTA 300
consensus_2861#1      ------------------------------------------------------------
                                                                                  

consensus_2861#0      AACAAAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAG 360
consensus_2861#1      --CCGAGCGAAATCATTGCTAAAATAGCAAACAAACCTAAACAGCGAGAGAGAGAGAGAG 58
                        *  *******************************************************

consensus_2861#0      AGAGTGAAAGAGAGAAAAATAAGAAATACAAAATAAATACCCGAAGGAGGA--AATACCA 418
consensus_2861#1      AGAGTGAAAGAGAGAAAAATAATAAATACGGGGTAGATACCCGAAGGAAAATGATAACCA 118
                      ********************** ******    ** ************  *  *  ****

consensus_2861#0      GAAGAAGAAAAAACAAGCTATTCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAA 478
consensus_2861#1      GAAGAAGAAAAAACAAGCTAATCAAGAGATGATGGATGGAATTGATAAATGAAGATAAAA 178
                      ******************** ***************************************

consensus_2861#0      TCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAACGATGA 538
consensus_2861#1      TCAGTAAGGCACGAAGAACATTAACAACTACAAAACAAGGAAGGTCATCGGCAAATTGAA 238
                      ******************************************************     *

consensus_2861#0      CAAAACAAGGAAGGTCATCGGCAA--ATTGAATGAAAGCAAATACTTTAAAGA-AAACAA 595
consensus_2861#1      TGAAAGCAAATACTTTAAAGAAAACAATTGAAAATAAGCATAAAAACTAAAAACAGACAA 298
                        ***  *   *  * *  *  **  ******   ***** * *   **** * * ****

consensus_2861#0      TTGA-------------------------------------------------------- 599
consensus_2861#1      CTTAAGATGGAAACAAAACAACAAAGTTAGTAATTTCATGTAATAATAAAAAAAAACGAA 358
                       * *                                                        

consensus_2861#0      ----
consensus_2861#1      CTGT 362