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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGGGTTGTGGTACCAGGTGGTACGATTGTGTGTCTTGCGAACCAGGGAATGGAAAAGCGTGCGTAAATAAATAATGATCTAGTGTGCCATTCTACCAAACAACAGGAGTAGCAGCATTAACAACAACAACAGCGGCAAAAAACGCATTTGAAAGGATTACGCGCGGCGCGTTTTTCGATAAAGGAAGTGTGTGTATGTGTGCGTGTTTGTATCTCTGTGTAAAAGTGCTCGTTGTGCTCGGTGTTTATTGCTTTCGTGAAAAGTGAAGTGTGAGCTTTTCCGGTTGCCATTGCCTCATCCCATACCCATCCGGCTGCCTCTCGGTTTGAGAGGTTTTTGTTTTTCGCAGACTTCGCTTTCGCATCGGTGCCAACGACGGCCTAGCCGCACACGCTCCCGCCCAAGGAAGCAAAGGAAAAATCCCGAAGGGTGTACACACTCGTTTCGGTGGCGATTTTGTTGTAACGCGTTTGCCGGGAAAGCTAGTCCCGCTTGCTTGGGGCAACGGGGCCGGGTGGTACGTGCGTTCGCCGACAGACGGGTTGCAGTGCATCGTGAAAAGCACGGAAATTGCATCAGAGCGCGGAGTGAAGCGCGAGCGCGAGCCTGTTCGCTTCGGATGTGCTACTGAGCGAGCGCGAGCAGACAGCAAACAGCCGACGAAGAAGCGACGCATCCTCCGCGGGATTGCCGTGCGTG]
[+] EMBL BM647416 [CCGGGTTGTGGTACCAGGTGGTACGATTGTGTGTCTTGCGAACCAGGGAATGGAAAAGCGTGCGTAAATAAATAATGATCTAGTGTGCCATTCTACCAAACAACAGGAGTAGCAGCATTAACAACAACAACAGCGGCAAAAAACGCATTTGAAAGGATTACGCGCGGCGCGTTTTTCGATAAAGGAAGTGTGTGTATGTGTGCGTGTTTGTATCTCTGTGTAAAAGTGCTCGTTGTGCTCGGTGTTTATTGCTTTCGTGAAAAGTGAAGTGTGAGCTTTTCCGGTTGCCATTGCCTCATCCCATACCCATCCGGCTGCCTCTCGGTTTGAGAGGTTTTTGTTTTTCGCAGACTTCGCTTTCGCATCGGTGCCAACGACGGCCTAGCCGCACACGCTCCCGCCCAAGGAAGCAAAGGAAAAATCCCGAAGGGTGTACACACTCGTTTCGGTGGCGATTTTGTTGTAACGCGTTTGCCGGGAAAGCTAGTCCCGCTTGCTTGGGGCAACGGGGCCGGGTGGTACGTGCGTTCGCCGACAGACGGGTTGCAGTGCATCGTGAAAAGCACGGAAATTGCATCAGAGCGCGGAGTGAAGCGCGAGCGCGAGCCTGTTCGCTTCGGATGTGCTACTGAGCGAGCGCGAGCAGACAGCAAACAGCCGACGAAGAAGCGACGCATCCTCCGCGGGATTGCCGTGCGTG]
consensusID : consensus_2862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGGGTTTTTAGGAGATTGCGAGAGTAGCAGCATTAACAACAACAACAGCGGCAAAAAACGCATTTGAAAGGATTACGCGCGTTGCGTTTTTCGATAAAAGAAGTGTGTGTGTGTGTGCGTGTTTGTTTCTCTGTGTAAAAGTGCTCGTTGTGCTCGGTGTTTATTGCTTTCGTGAAAAGTGAAGTGTGAGCTTTTCCGGTTGCCATTGCCTCATCTCACACCCACCCGGCTGCCGCTCGGTTTGGGAGGTTTTTGTTTTTCGCAGATTTCGCTTTCGCATCGGTGCCAACGACGGCCTAGCCGCACGCGCTCCCGCCCAAGGAAGCAAAGGAAAAATCCCGAAGGGTGTACACACTCGTTCCGGTGGCGATTTTGTTGTAACGCGTTTGCCGGGAAAGCTAGTCCCGCTTGCTTGGGGCAACGGGGCCGGGTGGTACGTGCGTTCGCCGACGGACGGGTTGCAGTGCAGCGTGAAAAGCACGGAAATTGCATCAGAGCGCGGAGTGGAGCGCGAGCCTGTTCGCTTCGGATGTGCTACTGAGCGAGCGCGAGCAGACAGCAAACAGCCGACGAAGAAGCGACGCATCCTCCGCGGGATCGCCGTGCGTGTGTGTGTGTGTCCAGAAGTAATC]
[+] EMBL BM640034 [CCGGGTTTTTAGGAGATTGCGAGAGTAGCAGCATTAACAACAACAACAGCGGCAAAAAACGCATTTGAAAGGATTACGCGCGTTGCGTTTTTCGATAAAAGAAGTGTGTGTGTGTGTGCGTGTTTGTTTCTCTGTGTAAAAGTGCTCGTTGTGCTCGGTGTTTATTGCTTTCGTGAAAAGTGAAGTGTGAGCTTTTCCGGTTGCCATTGCCTCATCTCACACCCACCCGGCTGCCGCTCGGTTTGGGAGGTTTTTGTTTTTCGCAGATTTCGCTTTCGCATCGGTGCCAACGACGGCCTAGCCGCACGCGCTCCCGCCCAAGGAAGCAAAGGAAAAATCCCGAAGGGTGTACACACTCGTTCCGGTGGCGATTTTGTTGTAACGCGTTTGCCGGGAAAGCTAGTCCCGCTTGCTTGGGGCAACGGGGCCGGGTGGTACGTGCGTTCGCCGACGGACGGGTTGCAGTGCAGCGTGAAAAGCACGGAAATTGCATCAGAGCGCGGAGTGGAGCGCGAGCCTGTTCGCTTCGGATGTGCTACTGAGCGAGCGCGAGCAGACAGCAAACAGCCGACGAAGAAGCGACGCATCCTCCGCGGGATCGCCGTGCGTGTGTGTGTGTGTCCAGAAGTAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2862#0 CCGGGTTGTGGTACCAGGTGGTACGATTGTGTGTCTTGCGAACCAGGGAATGGAAAAGCG 60
consensus_2862#1 ------------------------------------------------------------
consensus_2862#0 TGCGTAAATAAATAATGATCTAGTGTGCCATTCTACCAAACAACAGGAGTAGCAGCATTA 120
consensus_2862#1 ------------------------CCGGGTTTTTAGGAGATTGCGAGAGTAGCAGCATTA 36
* ** ** * * * **************
consensus_2862#0 ACAACAACAACAGCGGCAAAAAACGCATTTGAAAGGATTACGCGCGGCGCGTTTTTCGAT 180
consensus_2862#1 ACAACAACAACAGCGGCAAAAAACGCATTTGAAAGGATTACGCGCGTTGCGTTTTTCGAT 96
********************************************** ************
consensus_2862#0 AAAGGAAGTGTGTGTATGTGTGCGTGTTTGTATCTCTGTGTAAAAGTGCTCGTTGTGCTC 240
consensus_2862#1 AAAAGAAGTGTGTGTGTGTGTGCGTGTTTGTTTCTCTGTGTAAAAGTGCTCGTTGTGCTC 156
*** *********** *************** ****************************
consensus_2862#0 GGTGTTTATTGCTTTCGTGAAAAGTGAAGTGTGAGCTTTTCCGGTTGCCATTGCCTCATC 300
consensus_2862#1 GGTGTTTATTGCTTTCGTGAAAAGTGAAGTGTGAGCTTTTCCGGTTGCCATTGCCTCATC 216
************************************************************
consensus_2862#0 CCATACCCATCCGGCTGCCTCTCGGTTTGAGAGGTTTTTGTTTTTCGCAGACTTCGCTTT 360
consensus_2862#1 TCACACCCACCCGGCTGCCGCTCGGTTTGGGAGGTTTTTGTTTTTCGCAGATTTCGCTTT 276
** ***** ********* ********* ********************* ********
consensus_2862#0 CGCATCGGTGCCAACGACGGCCTAGCCGCACACGCTCCCGCCCAAGGAAGCAAAGGAAAA 420
consensus_2862#1 CGCATCGGTGCCAACGACGGCCTAGCCGCACGCGCTCCCGCCCAAGGAAGCAAAGGAAAA 336
******************************* ****************************
consensus_2862#0 ATCCCGAAGGGTGTACACACTCGTTTCGGTGGCGATTTTGTTGTAACGCGTTTGCCGGGA 480
consensus_2862#1 ATCCCGAAGGGTGTACACACTCGTTCCGGTGGCGATTTTGTTGTAACGCGTTTGCCGGGA 396
************************* **********************************
consensus_2862#0 AAGCTAGTCCCGCTTGCTTGGGGCAACGGGGCCGGGTGGTACGTGCGTTCGCCGACAGAC 540
consensus_2862#1 AAGCTAGTCCCGCTTGCTTGGGGCAACGGGGCCGGGTGGTACGTGCGTTCGCCGACGGAC 456
******************************************************** ***
consensus_2862#0 GGGTTGCAGTGCATCGTGAAAAGCACGGAAATTGCATCAGAGCGCGGAGTGAAGCGCGAG 600
consensus_2862#1 GGGTTGCAGTGCAGCGTGAAAAGCACGGAAATTGCATCAGAGCGCGGAGTG------GAG 510
************* ************************************* ***
consensus_2862#0 CGCGAGCCTGTTCGCTTCGGATGTGCTACTGAGCGAGCGCGAGCAGACAGCAAACAGCCG 660
consensus_2862#1 CGCGAGCCTGTTCGCTTCGGATGTGCTACTGAGCGAGCGCGAGCAGACAGCAAACAGCCG 570
************************************************************
consensus_2862#0 ACGAAGAAGCGACGCATCCTCCGCGGGATTGCCGTGCGTG-------------------- 700
consensus_2862#1 ACGAAGAAGCGACGCATCCTCCGCGGGATCGCCGTGCGTGTGTGTGTGTGTCCAGAAGTA 630
***************************** **********
consensus_2862#0 ---
consensus_2862#1 ATC 633
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||