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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[AAAGATCTGCGTGAAAGGGAATGGGATTACGAGATACGGTAATTATTAATGGAAGCGCCCCCACCATTGGGGCGCGAAGCATTTCCAGCATTTCATTCCAAGGAATTTGCTTTTTATATGCTTGTCCGTGCTAGACCATGCATAACTAAACAATTACCTCCAAATACTCTTGCGATGTTACCGTTTCCGTACACTCTCGATTCTCTTACACTTTTCTTCTTACCTAGTAGTCTACCTACCTAGTCAGCAGAAATGGTGTAGAACAATTTAGTCTCGGAAAGCTCTTGCTAAAGGCTTCGAAGGGCAGCAGGAAAATGGATTTTAACTCTTGTAAATGCGAATACAAATAGTTGATGATATTAGCAAAGATATTGAGAAAGGATAAGAAGGGTGAAGAAAGGAGCTAGAGGGAGAGAGACATTCATTCTTATAGGAAATGAACTAAATGTAATTGTACTCTGCAGCACTCTTGTTGGTCAAATCCAACAGGAATTTTCAAGCAGCCTGCCCAAAAAGGGTGCCATAGAGTTCAATTTCCAACACATGAAGTTCACATGAAGTTAAGAAAGAGTCAAGTAATTGTCCCGCAATTATGAGAACCCCTGGAAACCCCTGTAAAGGAGATTAAAAAAAGAGCAGACAGACCATTGCTTGATTATATTTTAGTTTAAGTTTCGGTGTGCAGCTTTCCAGCA]
[+] EMBL BX609536 [AAAGATCTGCGTGAAAGGGAATGGGATTACGAGATACGGTAATTATTAATGGAAGCGCCCCCACCATTGGGGCGCGAAGCATTTCCAGCATTTCATTCCAAGGAATTTGCTTTTTATATGCTTGTCCGTGCTAGACCATGCATAACTAAACAATTACCTCCAAATACTCTTGCGATGTTACCGTTTCCGTACACTCTCGATTCTCTTACACTTTTCTTCTTACCTAGTAGTCTACCTACCTAGTCAGCAGAAATGGTGTAGAACAATTTAGTCTCGGAAAGCTCTTGCTAAAGGCTTCGAAGGGCAGCAGGAAAATGGATTTTAACTCTTGTAAATGCGAATACAAATAGTTGATGATATTAGCAAAGATATTGAGAAAGGATAAGAAGGGTGAAGAAAGGAGCTAGAGGGAGAGAGACATTCATTCTTATAGGAAATGAACTAAATGTAATTGTACTCTGCAGCACTCTTGTTGGTCAAATCCAACAGGAATTTTCAAGCAGCCTGCCCAAAAAGGGTGCCATAGAGTTCAATTTCCAACACATGAAGTTCACATGAAGTTAAGAAAGAGTCAAGTAATTGTCCCGCAATTATGAGAACCCCTGGAAACCCCTGTAAAGGAGATTAAAAAAAGAGCAGACAGACCATTGCTTGATTATATTTTAGTTTAAGTTTCGGTGTGCAGCTTTCCAGCA]
consensusID : consensus_2877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[CAGCATCGGNGCACCTTCATGTCGCCCGATGCTGAGTACTAGAAATAGAAACCAAAAAAAAAACATTATGATTGATGCATTAATTTTGCATTATACGTACAAGTAATACGATACAATCATTATTCTGGAGAGGAAGGCAAAATCCGGCGCAAAACGAGTGTGATTTCAATCTAGTATTTTTAGGGTTCAGAAAGATCTGCGTGGAGGGGAATGGGATTACGAAATACGGTAATTATTAATGGGAGCGCCCCCACCATTGGGGCGCGAAGCCATTNCTAGCATTTCATTCCCAAGGAATNCTGCTTT]
[+] EMBL BX619372 [CAGCATCGGNGCACCTTCATGTCGCCCGATGCTGAGTACTAGAAATAGAAACCAAAAAAAAAACATTATGATTGATGCATTAATTTTGCATTATACGTACAAGTAATACGATACAATCATTATTCTGGAGAGGAAGGCAAAATCCGGCGCAAAACGAGTGTGATTTCAATCTAGTATTTTTAGGGTTCAGAAAGATCTGCGTGGAGGGGAATGGGATTACGAAATACGGTAATTATTAATGGGAGCGCCCCCACCATTGGGGCGCGAAGCCATTNCTAGCATTTCATTCCCAAGGAATNCTGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2877#0 AAAGATCTGCGTGAAAGGGAATGGGATTACGAGATACGGTAATTATTAATGGAAGCGCCC 60
consensus_2877#1 ------------------------------------------------------------
consensus_2877#0 CCACCATTGGGGCGCGAAGCATTTCCAGCATTTCATTCCAAGGAATTTGCTTTTTATATG 120
consensus_2877#1 ------------------------------------------------------------
consensus_2877#0 CTTGTCCGTGCTAGACCATGCATAACTAAACAATTACCTCCAAATACTCTTGCGATGTTA 180
consensus_2877#1 ------------------------------------------------------------
consensus_2877#0 CCGTTTCCGTACACTCTCGATTCTCTTACACTTTTCTTCTTACCTAGTAGTCTACCTACC 240
consensus_2877#1 ------------------------------------------------------------
consensus_2877#0 TAGTCAGCAGAAATGGTGTAGAACAATTTAGTCTCGGAAAGCTCTTGCTAAAGGCTTCGA 300
consensus_2877#1 ------------------------------------------------------------
consensus_2877#0 AGGGCAGCAGGAAAATGGATTTTAACTCTTGTAAATGCGAATACAAATAGTTGATGATAT 360
consensus_2877#1 --------------------------------------CAGCATCGGNGCACCTTCATGT 22
* * * ** *
consensus_2877#0 TAGCAAAGATATTGAGAAAGGATAAGAAGGGTGAAGAAAGGAGCTAGAGGGAGAGAGACA 420
consensus_2877#1 CGCCC--GATGCTGAGTACTAGAAATAGAAACCAAAAAAAAAAC-ATTATGATTGATGCA 79
* *** **** * ** * ** *** * * * ** ** **
consensus_2877#0 TTCATTCTTATAGGAAATGAACTAAATGTAATTGTACTCTGCAGCACTCTTGTTGGTCAA 480
consensus_2877#1 TTAATTTT----------GCATTATACGTACAAGTAAT--ACGATACAATCATTATTC-- 125
** *** * * * ** * *** *** * * ** * ** **
consensus_2877#0 ATCCAACAGGAATTTTCAAGCAGCCTGCCCAAAAAGGGTGCCATAGAGTTCAATTTCCAA 540
consensus_2877#1 --TGGAGAGGAAGGC---AAAATCCGGCGCAAAACGAGTGT----GATTTCAATCTAGTA 176
* ***** * * ** ** ***** * *** ** ****** * *
consensus_2877#0 CACATGAAGTTCACATGAAGTTAAGAAAGAGTCAAGTAATTGTCCCGCAATTATGAGAAC 600
consensus_2877#1 TTTTTAGGGTTCAGAAAGATCTGCGTGGAGGGGAA----------TGGGATTACGAAATA 226
* ***** * * * * * ** * **** ** *
consensus_2877#0 CCCTGGAAACCCCTGTAAAGGAGATTAAAAAAAGAGCAGACAGACCATTGCTTGATTATA 660
consensus_2877#1 CGGTAATTATTAATGGGAGCGCCCCCACCATTGGGGCGCG-AAGCCATTNCTAG----CA 281
* * * ** * * * * * ** * ***** ** * *
consensus_2877#0 TTTTAGTTTAAGTTTCGGTGTGCAGCTTTCCAGCA 695
consensus_2877#1 TTTCATTCCCAA----GGAATNCTGCTTT------ 306
*** * * * ** * * *****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||