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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence
[TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGAGCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCATTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC]
[+] EMBL BX467251 [TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCGAACTTTTTCCTGCGCTGCGAGCCGACCGGCACACCGTGGGAGTTGGTACGCCACCCGTGCTCCGGACGACGGCTGTTCCATTTCGCCCGTCAGCGCTGCACCGCCCCGCTCGATTGGGAGGTACCGTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCTGCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGCAGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGACCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTACGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGAGCCAAACGGACGGAACCGGGACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACATCGGTAACACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCGTTGGANCAC]
consensusID : consensus_289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence
[GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTACCCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA]
[+] EMBL BX468579 [GATCGGCCGAGGTNAGTAAAGGTGAAAGTAGAGCCCATCCATCATGAGCAAGTTGCTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTCGCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTGACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCGGCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGACGACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGAGGTACCCGTTGCGGGGGGCCAACGGGTCAAANCCCGGGACCGCCTTGGAAAACCGGTGCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGATCTGGAGCCCGGGCTGTGGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATTTCCGGCAGGGCCGAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGCAGGCNAACTGTTCCGGTACGGGGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGGGCATTGCATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGCTTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_289#0 --TCAGGCAGAATCGCCACGAGGTNNTGAAAGTAAGAGCCCATCCATCATGAGCAAGTTG 58
consensus_289#1 GATCGGCCGAGGTNA----GTAAAGGTGAAAGTA-GAGCCCATCCATCATGAGCAAGTTG 55
** * * * * ******** *************************
consensus_289#0 CTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTC 118
consensus_289#1 CTACTTTGTGTGCTGCTGTGCGTTCCGCTTGTGGCGGAGGTTAGTGTAGGCGAACCCGTC 115
************************************************************
consensus_289#0 GCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTG 178
consensus_289#1 GCAGACGATGACGCTGCCGGCCGGCTCTATCCGGTCGACTGTGTGGTGCCGAGCTGCCTG 175
************************************************************
consensus_289#0 ACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCC-GAACTTTTT---CCTGCG 234
consensus_289#1 ACCGAGCTGGACCGTGCCACGGTGTGGCCGTTCGAGGATCCCGAACCTTTTTTCCCTGCG 235
***************************************** **** **** ******
consensus_289#0 -CTGCGAG-CCGACCGG-CACACCGTGGGA--GTTGGTACG-CCACCCGTGCTCCGG-AC 287
consensus_289#1 GCTGCGAGACCGACCGGGCACACCGTGGGAAGGTTGGTACGGCCACCCGTGCTCCGGGAC 295
******* ******** ************ ********* *************** **
consensus_289#0 GACGGCTGTTCCATTTCGCCCGTCAG-CGCT--GCACCG---CCCCGCTCGATTGGG--A 339
consensus_289#1 GACGGCTGTTCCATTTCGCCCGTCAGGNGCTTGGCACCGANTCCCGGCTCGATTGGGCGA 355
************************** *** ****** *** *********** *
consensus_289#0 GGTACC-GTGCGGGGGCACGGTCAACCCGGGACCGCTGGAACCGTGCCCGGAGGTGAGCT 398
consensus_289#1 GGTACCCGTTGCGGGGGGCCAACGGGTCAAANC--CCGGGACCGC-CTTGGAAAACCGGT 412
****** ** **** * * * * * ** **** * *** * *
consensus_289#0 GCGCGACCGAGGCCGATCTGGGCCGGCTGTGGCCGACCGAGGAACCGCCCTCCTTTCTGC 458
consensus_289#1 GCCCCAGGGAGGGTGAGCTGCCGCGNAACCGGAGGGCCGA---TCTGGAGCCCGGGCTGT 469
** * * **** ** *** ** ** * **** * * ** ***
consensus_289#0 AGTGCATTCCGCAGGCGACCGGTGGGATTGCGCCCGTGCTGCAGCACTGTCCGTACGGGA 518
consensus_289#1 GGGCCAGACCCGAGGGAACCGGGCCGTCCGTTTTCTTGCAGGTGCATT-TCCG-GCAGGG 527
* ** ** *** ***** * * * *** * *** * **** * **
consensus_289#0 CCCTGTTTAGCATGCGGCATCAGGCATGCATAACCGTGTTCCGCTGGGAGGCGGAATGTA 578
consensus_289#1 CC-------GAACCCGGGATTGGGGATTTGCGCCACCGGTTGGCTGC-AGGCNAACTGTT 579
** * * *** ** ** ** * * * **** **** * ***
consensus_289#0 CGTACGGAAGGGGTAGAAGGCTTGGAGCAGCCCCGGGGGCCGGACCCGGGATTGGGCNGA 638
consensus_289#1 C---CGGTACGG---GGACCCCTGGTTTAGCCATTGCGGGGCATTCCAGGG--GCATTGC 631
* *** * ** * * * *** **** * ** ** ** * *
consensus_289#0 GCCAAACGGACGGAACCGG--GACAAATTGGAATTCCAGCNAACACAACGGAAGGCAACA 696
consensus_289#1 ATTACACCGGTGGTTCCCGCTGGCGAGGCGGAAATTGTACGTTCGAGGGGTGAGGC---- 687
* ** * ** ** * * * * **** * * * * ****
consensus_289#0 TCGGTAAC-ACGGCAAGGCCGGCCAACCGGAACCCAAGAAACCNACCCGGTGCCCGGGCG 755
consensus_289#1 TTGACACCCGGGGCCGAACCGGGTAGGCGAAGCCAAACGA-------------------- 727
* * * * *** **** * ** * ** ** *
consensus_289#0 TTGGANCAC 764
consensus_289#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||