These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGTCGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTCCTTTCCTTCGTGGTAAG] [+] EMBL BM590974 [CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGTCGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTCCTTTCCTTCGTGGTAAG] consensusID : consensus_2893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [AATCGCCCGAGGTTTGCTCCAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTCCTTTCCTT] [+] EMBL AL934781 [AATCGCCCGAGGTTTGCTCCAGCTAACATCGATGGATATGCAGTTCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCCTGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGGACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCAACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCGAGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCGTGCCGCCGAGTACGGTCGGGCTGCTGAATGCGAATTACGGCGAGAATTGATGACGACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGGAGGACCTGTACGACATCACGTTAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTCCTTTCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2893#0 CCGCGGACGCGTGGGCGCCCTCCGAGGACATCGATAAGCTAACATCGATGGATATGCAGT 60 consensus_2893#1 ---------------AATCGCCCGAGG-TTTGCTCCAGCTAACATCGATGGATATGCAGT 44 * ****** * ************************ consensus_2893#0 TCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCC 120 consensus_2893#1 TCTACGGGCACGATGCGGACTCACTGTCCGGCACGTCGGACAACGTCAAGTCGCCGTTCC 104 ************************************************************ consensus_2893#0 TGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGG 180 consensus_2893#1 TGCTGCACGCGAACAAACCGGCAACGCCAACGCTGAAGTTCCACAACCACTTCCCACCGG 164 ************************************************************ consensus_2893#0 ACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCA 240 consensus_2893#1 ACGTACCGACCAGTGACAAAAAGGATCCGAGCATCATCATGGACGGTTCGATGGTGACCA 224 ************************************************************ consensus_2893#0 ACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCACTGAGCG 300 consensus_2893#1 ACTCGATGGTTGACTTTACGCCCCAGATCAAGCGCCAGCGGATGACGCCGCCGCTGAGCG 284 **************************************************** ******* consensus_2893#0 AGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCG 360 consensus_2893#1 AGCGGGTCATGCTGTACGTCCGCCAGGACAATGAGGATGTCTATACGCCCCTGCACGTCG 344 ************************************************************ consensus_2893#0 TGCCGCCGAGTACGGTCGGGCTGCTGAATGCGATTGAAAATAAATTCAAAATTTCCTCGT 420 consensus_2893#1 TGCCGCCGAGTACGGTCGGGCTGCTGAATGCGA--------------------------- 377 ********************************* consensus_2893#0 CGAGAATTAATACTATTTATCGCAAAAATAAGAAAGGAATTACGGCGAGAATTGATGACG 480 consensus_2893#1 --------------------------------------ATTACGGCGAGAATTGATGACG 399 ********************** consensus_2893#0 ACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGG 540 consensus_2893#1 ACATGATCAGACACTACTGCAACGAGGACATCTTCATACTGGAAGTGCAACGGTACGAGG 459 ************************************************************ consensus_2893#0 AGGACCTGTACGACATCACGTTAACGGAGCTGCCAACGCACTAGACACGTGACGTTTCTC 600 consensus_2893#1 AGGACCTGTACGACATCACGTTAACGGAGCTGCCGACGCACTAGACACGTGACGTTTCTC 519 ********************************** ************************* consensus_2893#0 CTTTCCTTCGTGGTAAG 617 consensus_2893#1 CTTTCCTT--------- 527 ******** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||