These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGTCCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTGTCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAACGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTTACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACTCCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGGCTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGTCGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGACGGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCATCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTGAAGGGTGAGACATTATTTTTACTGC] [+] EMBL BX468626 [CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGTCCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTGTCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAACGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTTACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACTCCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGGCTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGTCGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGACGGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCATCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTGAAGGGTGAGACATTATTTTTACTGC] consensusID : consensus_2894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTAGCGAGATAGTGCAAATTGTTAAACGCATCGAGCGCTTCTGGAAGGGAGCGAGTGTTGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATTATAAACATGTGTGGTGTGATTTTATTGAAGGGAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACACACGCACACACTGTACTGTGATAGATGATGGAAGGGGGTTCGAAAATAACGATGGATTGGAGTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATAAAAAGTCAGTGAAGTAGCT] [+] EMBL BM640330 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTAGCGAGATAGTGCAAATTGTTAAACGCATCGAGCGCTTCTGGAAGGGAGCGAGTGTTGGGAACAGGGCCGAAAGTGGGAGGTTGATCTGTGATATTTGGTGCACTTGCGTCATGGGCGATTATAAACATGTGTGGTGTGATTTTATTGAAGGGAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACACACGCACACACTGTACTGTGATAGATGATGGAAGGGGGTTCGAAAATAACGATGGATTGGAGTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATAAAAAGTCAGTGAAGTAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2894#0 CAGATCGGCCGAGGAGNGTATCGCCTTTGGCATGCGAACAAGCTGCGATTTGATATCAGT 60 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 CCCAATTACGTGGCTGAGGCGCGTAACACTAACACACAACGCCGATAGTCTCGATTGTTG 120 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 TCTCAAGTGCTACGCTCCCGCTGATAGGTTATCATCGTTCATCGTCTTCGTAGTTTGGAA 180 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 CGACCGTGTCCAACCGTGGAAGTGCCGTCTCGCAGTGTCCGGGCAGCGTGTCAACAGTTT 240 consensus_2894#1 ------------------------------------------------------------ consensus_2894#0 ACACAAGCCAGCCCAATCATGGGCTTTTGGAGACGGCGATTCCGTGTCATCGAGCAAACT 300 consensus_2894#1 --------CCGCCCACGCGTCCGCCCACGCGTCCGG---TTTAGCGAGATAGTGCAAATT 49 * ***** * * ** * *** ** * * ** * ***** * consensus_2894#0 CCTTGCTGTGGTAGAGCCCTCCGACCAGGACATTGCTATCCAGCACGTGCCATCGGCTGG 360 consensus_2894#1 GTTAAACGCA-TCGAGCGCTTCTGGAAGGG-----------AGCGAGTGTTGGGAACAGG 97 * * * **** ** * *** *** *** * ** consensus_2894#0 CTCATCGGTGGGAATCGATTTCCTGCTGCTTGTTTGCTTCCTGGTGATGATCTTGCTGGT 420 consensus_2894#1 GCCGAAAGTGGGAGGTTGATCTGTGATATTT--------------GGTGCACTTGCG--- 140 * ****** * ** * ** * ** ***** consensus_2894#0 CGGGTTCGTGTTGCGACTGTTTCTTCAAATGTGGCGTGCTCGCATCGAGTGCCAATGGAC 480 consensus_2894#1 -----TCATGG-GCGATTATAAA--CATGTGTGGTGTGATTTTATTGAAGG--------- 183 ** ** **** * * ** ***** *** * ** ** * consensus_2894#0 GGAGGATGCGGCCGTAGTACGGCGATTAGTTTAGCGAGATAGTGCAAATTGTTGAACGCA 540 consensus_2894#1 GAGGGACATTATTTTACTGCCCCGTTTATTTCACTGCAGCGACGTATGACGACACACACG 243 * *** ** * * ** *** ** * * * * * ** * consensus_2894#0 TCGAGCGCTGCCGGAAGGGAGCGAGTGGCGGGAACAGGGCCGAAAGTGGGAGGTTGATCT 600 consensus_2894#1 -CACACACTGT---ACTGTGATAGATGATGGAAGGGGGTTCGAAAATA--ACGATGGATT 297 * * *** * * ** ** * ** ***** * * * ** * consensus_2894#0 GTGATATTTGGTGCACTTGCGTCATGGGCGATCATAAACATGTGTGGTGTGATTTTATTG 660 consensus_2894#1 GGAGTGCTCGAACCAGAAAATCAGCTGATGGTGATCAGCTGAGGAGAACTGAAATTAATA 357 * * * * ** * * * ** * * * * *** *** * consensus_2894#0 AAGGGTGAG-ACATTATTTTTACTGC 685 consensus_2894#1 AAAAGTCAGTGAAGTAGCT------- 376 ** ** ** * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||