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Anopheles gambiae
cluster # 2898 cluster # 2898       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2898#0 length = 628 sequences # 1  
consensus_2898#1 length = 360 sequences # 1  

consensusID : consensus_2898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGTGAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAGCCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGATGGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTACACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTACAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGAGTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGGAATCTTCTGCTCGGAACCAATTTGCCGT]

[+] EMBL BM657186             [CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGTGAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAGCCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGATGGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTACACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTACAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGAGTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGGAATCTTCTGCTCGGAACCAATTTGCCGT]


>consensus_2898#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGT GAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAG CCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGAT GGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTAC ACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTA CAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTA CGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGA TGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGA GTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGG GTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGG AATCTTCTGCTCGGAACCAATTTGCCGT



consensusID : consensus_2898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence
                              [TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAACCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTCTCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG]

[+] EMBL BX619619             [TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAACCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTCTCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG]


>consensus_2898#1 TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAA CCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTC TCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGC CAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGT TTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCC GCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2898#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGT 60
consensus_2898#1      ------------------------------------------------------------
                                                                                  

consensus_2898#0      GAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAG 120
consensus_2898#1      ------------------------------------------------------------
                                                                                  

consensus_2898#0      CCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGAT 180
consensus_2898#1      ---------------TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNG 45
                                     *  *  *    *   **** * *   * * *   ** * *     

consensus_2898#0      GGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTAC 240
consensus_2898#1      CATGTAGTCGNCAAA--------CCNATTACTATAGGNATCATCGTTGTCGGCGCG---C 94
                        ****   *  * *        **  *  * *  ** ** * * **   *    *   *

consensus_2898#0      ACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTA 300
consensus_2898#1      ATGCTGCNAGCTG-ATCGCGCATCGTCTCC----CCGTCCGGTGCCGTCCCGTTA-CGTG 148
                      *  *       ** **   ** ** * **     * *  **      *   ***   ** 

consensus_2898#0      CAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAG-AACGAGTACTCCCACT 359
consensus_2898#1      CCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACT 208
                      * *  *** *    *  ***********************  * ****************

consensus_2898#0      ACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGA-TTTGTGC 418
consensus_2898#1      ACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGC 268
                      ************ **************************************    *****

consensus_2898#0      GATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGA 478
consensus_2898#1      GATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGC 328
                      *********************************** **************  ******* 

consensus_2898#0      GAGTGTCGCTGC-AAGCTTGGC-TTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGC 536
consensus_2898#1      GAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG---------------------------- 360
                      ***** ******  ******** *********                            

consensus_2898#0      CCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGG 596
consensus_2898#1      ------------------------------------------------------------
                                                                                  

consensus_2898#0      ATGGAATCTTCTGCTCGGAACCAATTTGCCGT 628
consensus_2898#1      --------------------------------
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)