These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2898#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGTGAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAGCCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGATGGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTACACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTACAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGAGTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGGAATCTTCTGCTCGGAACCAATTTGCCGT] [+] EMBL BM657186 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGTGAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAGCCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGATGGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTACACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTACAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGAGTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGGAATCTTCTGCTCGGAACCAATTTGCCGT] consensusID : consensus_2898#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAACCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTCTCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG] [+] EMBL BX619619 [TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAACCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTCTCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2898#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGT 60 consensus_2898#1 ------------------------------------------------------------ consensus_2898#0 GAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAG 120 consensus_2898#1 ------------------------------------------------------------ consensus_2898#0 CCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGAT 180 consensus_2898#1 ---------------TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNG 45 * * * * **** * * * * * ** * * consensus_2898#0 GGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTAC 240 consensus_2898#1 CATGTAGTCGNCAAA--------CCNATTACTATAGGNATCATCGTTGTCGGCGCG---C 94 **** * * * ** * * * ** ** * * ** * * * consensus_2898#0 ACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTA 300 consensus_2898#1 ATGCTGCNAGCTG-ATCGCGCATCGTCTCC----CCGTCCGGTGCCGTCCCGTTA-CGTG 148 * * ** ** ** ** * ** * * ** * *** ** consensus_2898#0 CAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAG-AACGAGTACTCCCACT 359 consensus_2898#1 CCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACT 208 * * *** * * *********************** * **************** consensus_2898#0 ACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGA-TTTGTGC 418 consensus_2898#1 ACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGC 268 ************ ************************************** ***** consensus_2898#0 GATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGA 478 consensus_2898#1 GATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGC 328 *********************************** ************** ******* consensus_2898#0 GAGTGTCGCTGC-AAGCTTGGC-TTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGC 536 consensus_2898#1 GAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG---------------------------- 360 ***** ****** ******** ********* consensus_2898#0 CCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGG 596 consensus_2898#1 ------------------------------------------------------------ consensus_2898#0 ATGGAATCTTCTGCTCGGAACCAATTTGCCGT 628 consensus_2898#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||