These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG] [+] EMBL AL932236 [ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG] consensusID : consensus_2938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC] [+] EMBL BX623877 [GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2938#0 -ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGC 59 consensus_2938#1 GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGC 60 * * * *********************************************** consensus_2938#0 CAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTG 119 consensus_2938#1 CAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTG 120 ************************************************************ consensus_2938#0 CCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCT 179 consensus_2938#1 CCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCT 180 ************************************************************ consensus_2938#0 TTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTT 239 consensus_2938#1 TTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTT 240 ************************************************************ consensus_2938#0 CCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGA 299 consensus_2938#1 CCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGA 300 ************************************************************ consensus_2938#0 ACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGT 359 consensus_2938#1 ACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGT 360 ************************************************************ consensus_2938#0 AGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCG 419 consensus_2938#1 AGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCG 420 ************************************************************ consensus_2938#0 GGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACC 479 consensus_2938#1 GGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACC 480 ************************************************************ consensus_2938#0 GACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCG 539 consensus_2938#1 GACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCG 540 ************************************************************ consensus_2938#0 GCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGA 599 consensus_2938#1 GCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGA 600 ************************************************************ consensus_2938#0 TCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG 651 consensus_2938#1 TCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC------------- 639 *************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||