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Anopheles gambiae
cluster # 2938 cluster # 2938       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2938#0 length = 651 sequences # 1  
consensus_2938#1 length = 639 sequences # 1  

consensusID : consensus_2938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence
                              [ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG]

[+] EMBL AL932236             [ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG]


>consensus_2938#0 ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCC AGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGC CTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTT TAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTC CCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAA CGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTA GATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGG GCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCG ACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGG CCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGAT CATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG



consensusID : consensus_2938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 639
fasta sequence
                              [GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC]

[+] EMBL BX623877             [GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGCCAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTGCCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCTTTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTTCCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGAACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGTAGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCGGGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACCGACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCGGCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGATCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC]


>consensus_2938#1 GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGC CAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTG CCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCT TTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTT CCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGA ACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGT AGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCG GGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACC GACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCG GCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGA TCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2938#0      -ATCGCCGAGGTTAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGC 59
consensus_2938#1      GTGTGTGCATGAAAAAAAAACGGACGACCCAGCATTGCCAAGTCATCTCTCCGAATGTGC 60
                          *   * *  ***********************************************

consensus_2938#0      CAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTG 119
consensus_2938#1      CAGCGTGCGTACCGTGTTTTCTGATCCGCGTGCCCGTTTTGTTGCGGCAACAGTTTAGTG 120
                      ************************************************************

consensus_2938#0      CCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCT 179
consensus_2938#1      CCTAAAAACGATCGACTCGTGTGCGTGCTTGTGTGTACAAATTAAGAAGTGGCATTAGCT 180
                      ************************************************************

consensus_2938#0      TTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTT 239
consensus_2938#1      TTAAGACGTTGTAATCTAGCTTCAGTTCAACCGTTGTGGCTTGGATCATCTCCAATCTTT 240
                      ************************************************************

consensus_2938#0      CCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGA 299
consensus_2938#1      CCCCCCTGTACACCCCATCATTTCAACATCCACAGTCAACATGTTGAAGAACATTCACGA 300
                      ************************************************************

consensus_2938#0      ACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGT 359
consensus_2938#1      ACGTACCGTGAAGAAGGTAAAGGGTAACCACTATGTGGCAACGCACGGTCGCGATACGGT 360
                      ************************************************************

consensus_2938#0      AGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCG 419
consensus_2938#1      AGATCTGCCGTACGCACAGGCCAACCGGGGCTACTCGACCGATGGCGAGGATAGCCAGCG 420
                      ************************************************************

consensus_2938#0      GGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACC 479
consensus_2938#1      GGCCCCCTCGGAGCGCACGCTGTCCGAGTATACGGTGGCGAACGAACGAGCCACACCACC 480
                      ************************************************************

consensus_2938#0      GACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCG 539
consensus_2938#1      GACTGCACCGGCCCGCAAATCACGCCCCGAGCACAAGTACCAGAACAACGGTGGCCCGCG 540
                      ************************************************************

consensus_2938#0      GCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGA 599
consensus_2938#1      GCCGCTCTCTAGTCCACCGACGCGCGCCCCACCGAGGGCACCGTCCGCGCTCAGCTACGA 600
                      ************************************************************

consensus_2938#0      TCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATCCGCGGCTATAAGG 651
consensus_2938#1      TCATGGCGGTGAAACGGGCAGCGATATCTACGTCACATC------------- 639
                      ***************************************             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)