These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTACGTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCGGTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCGAGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGACAATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTAGCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAGACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCGCAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTGGACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTGAAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCGTGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGTTGTGAACCGTG] [+] EMBL BM578161 [CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTACGTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCGGTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCGAGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGACAATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTAGCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAGACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCGCAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTGGACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTGAAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCGTGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGTTGTGAACCGTG] consensusID : consensus_2954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGACAATGACGCAGCAGACGAACGCCGGAACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCAGCGCACGAGGGGGGCCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCCCCGAGACGGGCAATCCCGGCGAGAATCGGGGGGAGGTGGAA] [+] EMBL BX609732 [GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGACAATGACGCAGCAGACGAACGCCGGAACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCAGCGCACGAGGGGGGCCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCCCCGAGACGGGCAATCCCGGCGAGAATCGGGGGGAGGTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2954#0 CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTAC 60 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 GTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCG 120 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 GTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCG 180 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 AGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGAC 240 consensus_2954#1 ------------------------GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGAC 36 **** ** ******** *** ********** **** consensus_2954#0 AATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTA 300 consensus_2954#1 AATGACGCAGCAGACGAACGCCGGAACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCA 96 ***************** **** ********************** ************ * consensus_2954#0 GCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAG 360 consensus_2954#1 GCGCACGAGGGGGGCCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCCCCGAG 156 ******** ***** *************************************** ***** consensus_2954#0 ACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCG 420 consensus_2954#1 ACGGGCAATCCCGGCGAGAATCGGGGGGAGGTGGAA------------------------ 192 ********** ************** ********** consensus_2954#0 CAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTG 480 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 GACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTG 540 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 AAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCG 600 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 TGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGT 660 consensus_2954#1 ------------------------------------------------------------ consensus_2954#0 TGTGAACCGTG 671 consensus_2954#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||