cluster # 2959

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Anopheles gambiae
cluster # 2959 cluster # 2959 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2959#0 length = 553 sequences # 1

consensus_2959#1 length = 436 sequences # 1

consensusID : consensus_2959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATGAAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGTTCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTTATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGTAGCAGAGTTTAGTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATCATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTCAGTTTGTCCCTGATA]

[+] EMBL BX610217             [AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATGAAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGTTCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTTATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGTAGCAGAGTTTAGTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATCATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTCAGTTTGTCCCTGATA]




>consensus_2959#0
AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATG
AAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGT
TCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTT
ATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGT
AGCAGAGTTTAGTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACTC
ATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAAT
GTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCACT
CTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTAG
CCGATATCGGTATCATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTCAG
TTTGTCCCTGATA

consensusID : consensus_2959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [CAGATTCGGCACGAGGGTGGTNTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATAACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATTCATGTACGTGTTTCTTTCTGTTTCATTCTTTTATCTTGANTNCAGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTGACGTGTGTNNGCATGCTAGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAGCAAGAAGAAGAGAGAG]

[+] EMBL BX619318             [CAGATTCGGCACGAGGGTGGTNTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTGCTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATAACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCCCCTGTTAGTGACCCCAGTAGCCGATATCGGTATTCATGTACGTGTTTCTTTCTGTTTCATTCTTTTATCTTGANTNCAGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTGACGTGTGTNNGCATGCTAGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAGCAAGAAGAAGAGAGAG]




>consensus_2959#1
CAGATTCGGCACGAGGGTGGTNTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTG
CTTCACCACCATCCCATTACTCATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACA
CACAAACACAAGTATATAATGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTAT
TTTTTCGAATGAAGATAACTCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCC
CCTGTTAGTGACCCCAGTAGCCGATATCGGTATTCATGTACGTGTTTCTTTCTGTTTCAT
TCTTTTATCTTGANTNCAGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTG
ACGTGTGTNNGCATGCTAGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAG
CAAGAAGAAGAGAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2959#0      AAGGGCGCGCGCGCGCGTGGGGAACGAACACAACGAGATTAGAGCCACGTGGTGTGGATG 60
consensus_2959#1      ------------------------------------------------------------
                                                                                  

consensus_2959#0      AAACAATCAAAAGTCAATCAATCTCTTTATTCACTCGCGTTCATCAGAAGAGTTCGTGGT 120
consensus_2959#1      ------------------------------------------------------------
                                                                                  

consensus_2959#0      TCGGAGGGGGGAGGGAGGCTGGTAAGCAAAAGGAAACAACAGTGGAATGCGGGTGCATTT 180
consensus_2959#1      ------------------------------------------------------------
                                                                                  

consensus_2959#0      ATGTTTAAGCAAACTCTCTCGGTACGTGTTAATTAATCGTTTCTCAGTATCATCAGCGGT 240
consensus_2959#1      -------------------------------------CAGAT-TCGGCACGAG-GGTGGT 21
                                                           *   * ** * *  *   * ***

consensus_2959#0      AGCAGAGTTTA-GTGGTTAGTGGTAGTTTCCTCCGTTTGCTTCACCACCATCCCATTACT 299
consensus_2959#1      NTCAGAGTTTNAGTGGTTAGTGGTAATTTCCTCCGTTTGCTTCACCACCATCCCATTACT 81
                        ********  ************* **********************************

consensus_2959#0      CATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACACAAACACAAGTATATAA 359
consensus_2959#1      CATTTAAAGCAAAAACTGGAACTTTATACGACGAAAACACACA--AACACAAGTATATAA 139
                      *******************************************  ***************

consensus_2959#0      TGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATCAC 419
consensus_2959#1      TGTAAGTGTAAATATGTTACGATCGATGCTTCTACTGCTATTTTTTCGAATGAAGATAAC 199
                      ********************************************************* **

consensus_2959#0      TCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCCCCCCTGTTAGTGACCCCAGTA 479
consensus_2959#1      TCTTTTTCATATTTTATCTCCCTCTCGTACACATCATCTCCCCTGTTAGTGACCCCAGTA 259
                      ************************************** *********************

consensus_2959#0      GCCGATATCGGTAT-CATGTACGTGTTTTTTTTTCTGTTTCATTCTTTTATCTTGAATTC 538
consensus_2959#1      GCCGATATCGGTATTCATGTACGTGTTTCTT--TCTGTTTCATTCTTTTATCTTGANTNC 317
                      ************** ************* **  *********************** * *

consensus_2959#0      AGTTTGTCCCTGATA--------------------------------------------- 553
consensus_2959#1      AGTTTGTCCCTGATACAAAGTTCTTAACGGATATANGGATGTGACGTGTGTNNGCATGCT 377
                      ***************                                             

consensus_2959#0      -----------------------------------------------------------
consensus_2959#1      AGTAAAATTAATGATCTTCAATTGGNTTTTGCGCGCCAAGAAGCAAGAAGAAGAGAGAG 436