These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTACTCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCAACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAACTGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCAATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAACATTACTCGAACCATGAAACAGATGTCCCGCGTCTAGTAGAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGTAGCAGCATCAATAGCAAAAACAAAACAGACACACACACTCGTCTAATCACCTTTCTTGCCTTAATTATGCGTTTGTTATCGATGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGCCGGCCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAATGAGATAAGCATTGTAGGGGTACGGCAAGAGCACCGGCGCTCT] [+] EMBL BM587623 [ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTACTCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCAACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAACTGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCAATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAACATTACTCGAACCATGAAACAGATGTCCCGCGTCTAGTAGAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGTAGCAGCATCAATAGCAAAAACAAAACAGACACACACACTCGTCTAATCACCTTTCTTGCCTTAATTATGCGTTTGTTATCGATGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGCCGGCCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAATGAGATAAGCATTGTAGGGGTACGGCAAGAGCACCGGCGCTCT] consensusID : consensus_2966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [GCGAGGCAGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACACACACGTCGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT] [+] EMBL BX469781 [GCGAGGCAGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAAAAAACTAAAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACACACACGTCGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTCCCGGTGCTGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCCCACCAAAACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2966#0 ACCAAAAAAAGAAGAAAAAATCCAATCGAAACTAAAAGATAAAAGACATTTTTGAATTAC 60 consensus_2966#1 ------------------------------------------------------------ consensus_2966#0 TCTCTTCGATCCTACTGCGAAAGCTGCCCTGCAAAAAAAAAATCGCTATAAAATAGGGCA 120 consensus_2966#1 ------------------------------------------------------------ consensus_2966#0 ACAGGAGAGATTTACTACTGTGTTACATACACGCAAGTTTATTACGTGCTCGGCTTTAAC 180 consensus_2966#1 ------------------------------------------------------------ consensus_2966#0 TGTTTGTTGTATTTATGAAGTAATGCCGGGAAGCAGGGGAAACATGTCCCCCCAAAAGCA 240 consensus_2966#1 ------------------------------------------------------------ consensus_2966#0 ATGTGTTTAGGATTAGTGCACACGGCCGAACCACGGAGGTACACGTAACGGGTGCGTAAC 300 consensus_2966#1 -----------------------------------------------------GCGAGGC 7 *** * consensus_2966#0 ATTACTCGAAC-CATGAAACAGATGTCCCGCG-TCTAG-TA-GAACTAAAAAAAAAACTA 356 consensus_2966#1 AGAACTCCGGCACGTTANNGAGATGTCCCGCGGTCTAGGTACNAACTAAAAAAAAAACTA 67 * **** * * * * ************ ***** ** ***************** consensus_2966#0 AAGAGAAGAAGCAGCAG-TAGCAGCATCAA-TAGCAAAAACAAAACAGACACACACACTC 414 consensus_2966#1 AAGAGAAGAAGCAGCAGGTAGCAGCATCAAGTAGCAAAAACAAAACAGACACACACACGT 127 ***************** ************ *************************** consensus_2966#0 --GTCTAATCACCTTTCTTG-CCTTAA-TTATGCGTTTGTTATCGA-TGCCTCCCGGTGC 469 consensus_2966#1 CGGTCTAATCACCTTTCTTGGCCTTAAGTTATGCGTTTGTTATCGAGTGCCTCCCGGTGC 187 ****************** ****** ****************** ************* consensus_2966#0 TGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGCC--GGCCGGCCGGCCTTCCCCACCAAA 527 consensus_2966#1 TGATGGGTGCTGAAGCAAGCCGCTGGTGCCGGACCGGACCGGCCGGCCTTCCCCACCAAA 247 ******************************** * * ********************** consensus_2966#0 ACACACGTGGGGGGAAGAGGGAGCGTGAGATTTAAAAGGAAAGCCGACGAGTTGATGAAT 587 consensus_2966#1 ACACACGTGGGGGGAAGAGGGAGCGTGAGATTGAAAAGGAAAGCCGAGGAGNT------- 300 ******************************** ************** *** * consensus_2966#0 GAGATAAGCATTGTAGGGGTACGGCAAGAGCACCGGCGCTCT 629 consensus_2966#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||