cluster # 2975

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Anopheles gambiae
cluster # 2975 cluster # 2975 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2975#0 length = 694 sequences # 1

consensus_2975#1 length = 626 sequences # 1

consensusID : consensus_2975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCGGCGAAAGTGTTGCGTTGTTTTCAAACCAACCGGACACAAGAAGCGTCCACCGAGCGCGGCCAACAATCCGTGGCTTACGAGCTACGCCCGGACGTGTTTTGCAGTGGTTTCGTGAGCAATGCTGAAGTTGCTACTCTCCCCGCACCGACAATGTTGCTGGCAGGGACTGACACGGTCTTCTCCATACAGCACGGAAGGAAAGCATGTGCTGCTCCGCAAGACGGTTCAATCGTTCGGACTGGGGAGGAATGGATTCCTGCAACCGATCCGGAACACCATTCAGCGGACGGTGGTCCGGCCCTCGCACACGGTTACGAAAACCGGTTCACAGGGATCGCGACTGATAAGGGTGCTGCTGGGTGGAACGGTCGTAAGCATCACGCTGGGCTATCAGTACCGGAAGTCGTTCGTGCACTGTGAGGCGTCCGTAAACCGGCTGGCCGGCCAGCGGCAGCTAGTGGACGACGGGGCGGTGCGTTTCGATTGGTGGAAGTTTTGGCATTACCTGAGGCGGCATTTGGGCAAGCTGATTGGTGCCGTTATGGCTGCCCTTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGCTCGGAGTGATCGTTAACAAGCTGGCCCGGTATGCAGGCAGCAGCATTAAAGACATCAATACCGCAAGCTTCTTTCGGGACATGCGGGGCCCTGGCGCTGCA]

[+] EMBL BM655031             [CCGGCGAAAGTGTTGCGTTGTTTTCAAACCAACCGGACACAAGAAGCGTCCACCGAGCGCGGCCAACAATCCGTGGCTTACGAGCTACGCCCGGACGTGTTTTGCAGTGGTTTCGTGAGCAATGCTGAAGTTGCTACTCTCCCCGCACCGACAATGTTGCTGGCAGGGACTGACACGGTCTTCTCCATACAGCACGGAAGGAAAGCATGTGCTGCTCCGCAAGACGGTTCAATCGTTCGGACTGGGGAGGAATGGATTCCTGCAACCGATCCGGAACACCATTCAGCGGACGGTGGTCCGGCCCTCGCACACGGTTACGAAAACCGGTTCACAGGGATCGCGACTGATAAGGGTGCTGCTGGGTGGAACGGTCGTAAGCATCACGCTGGGCTATCAGTACCGGAAGTCGTTCGTGCACTGTGAGGCGTCCGTAAACCGGCTGGCCGGCCAGCGGCAGCTAGTGGACGACGGGGCGGTGCGTTTCGATTGGTGGAAGTTTTGGCATTACCTGAGGCGGCATTTGGGCAAGCTGATTGGTGCCGTTATGGCTGCCCTTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGCTCGGAGTGATCGTTAACAAGCTGGCCCGGTATGCAGGCAGCAGCATTAAAGACATCAATACCGCAAGCTTCTTTCGGGACATGCGGGGCCCTGGCGCTGCA]




>consensus_2975#0
CCGGCGAAAGTGTTGCGTTGTTTTCAAACCAACCGGACACAAGAAGCGTCCACCGAGCGC
GGCCAACAATCCGTGGCTTACGAGCTACGCCCGGACGTGTTTTGCAGTGGTTTCGTGAGC
AATGCTGAAGTTGCTACTCTCCCCGCACCGACAATGTTGCTGGCAGGGACTGACACGGTC
TTCTCCATACAGCACGGAAGGAAAGCATGTGCTGCTCCGCAAGACGGTTCAATCGTTCGG
ACTGGGGAGGAATGGATTCCTGCAACCGATCCGGAACACCATTCAGCGGACGGTGGTCCG
GCCCTCGCACACGGTTACGAAAACCGGTTCACAGGGATCGCGACTGATAAGGGTGCTGCT
GGGTGGAACGGTCGTAAGCATCACGCTGGGCTATCAGTACCGGAAGTCGTTCGTGCACTG
TGAGGCGTCCGTAAACCGGCTGGCCGGCCAGCGGCAGCTAGTGGACGACGGGGCGGTGCG
TTTCGATTGGTGGAAGTTTTGGCATTACCTGAGGCGGCATTTGGGCAAGCTGATTGGTGC
CGTTATGGCTGCCCTTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGCTCGGAGT
GATCGTTAACAAGCTGGCCCGGTATGCAGGCAGCAGCATTAAAGACATCAATACCGCAAG
CTTCTTTCGGGACATGCGGGGCCCTGGCGCTGCA

consensusID : consensus_2975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGTGGGCAAGCTGATTGGTGCCGTTATGGCTGCCCTTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGCTCGGAGTGATCGTTAACAAGCTGGCCCGGTATGCAGGCAGCAGCATTAAAGACATCAATACCGCAAGCTTCTTTCGGGACATGCGGGGCCCTGCGCTGCAGCTGTTCGGCATGTATCTGGCCCAGTCCGGCTTTACCTTCCTGTCCATTCTGCTGCTCAGCCAGATCGGCGAGCAGATGGCGGCCAGCATCAGGCAGGACCTGTTCAAGCAGATCATCATCCAAGATCTGGAGTTTTTCGACCACAATCGTACCGGCGAGCTGGTCAACCGGCTGACCGCGGACGTGCAAGATTTCAAGTCCAGCTTCAAGCAGTGCATCTCGCAGGGTTTGCGCAGCTTCGCCCAGCTCGTCGGCGGTGGCATTTCCCTGTTCTGGATCTCGCCCCAGCTGGCCAGCATTGCGCTCGTGTCGGTCCCGGTAGCGGTGGCCATGTTTTCCCTGCTCGGTCGCTCCCTGCGCCACCTAAGCAAAAAAGCCCAGGCCCAATCGGAGCGAGCCACATCGGTGGGAGTGAGGGAGGCACTG]

[+] EMBL BM584166             [CCGCCCACGCGTCCGCCCACGCGTCCGTGGGCAAGCTGATTGGTGCCGTTATGGCTGCCCTTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGCTCGGAGTGATCGTTAACAAGCTGGCCCGGTATGCAGGCAGCAGCATTAAAGACATCAATACCGCAAGCTTCTTTCGGGACATGCGGGGCCCTGCGCTGCAGCTGTTCGGCATGTATCTGGCCCAGTCCGGCTTTACCTTCCTGTCCATTCTGCTGCTCAGCCAGATCGGCGAGCAGATGGCGGCCAGCATCAGGCAGGACCTGTTCAAGCAGATCATCATCCAAGATCTGGAGTTTTTCGACCACAATCGTACCGGCGAGCTGGTCAACCGGCTGACCGCGGACGTGCAAGATTTCAAGTCCAGCTTCAAGCAGTGCATCTCGCAGGGTTTGCGCAGCTTCGCCCAGCTCGTCGGCGGTGGCATTTCCCTGTTCTGGATCTCGCCCCAGCTGGCCAGCATTGCGCTCGTGTCGGTCCCGGTAGCGGTGGCCATGTTTTCCCTGCTCGGTCGCTCCCTGCGCCACCTAAGCAAAAAAGCCCAGGCCCAATCGGAGCGAGCCACATCGGTGGGAGTGAGGGAGGCACTG]




>consensus_2975#1
CCGCCCACGCGTCCGCCCACGCGTCCGTGGGCAAGCTGATTGGTGCCGTTATGGCTGCCC
TTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGCTCGGAGTGATCGTTAACAAGC
TGGCCCGGTATGCAGGCAGCAGCATTAAAGACATCAATACCGCAAGCTTCTTTCGGGACA
TGCGGGGCCCTGCGCTGCAGCTGTTCGGCATGTATCTGGCCCAGTCCGGCTTTACCTTCC
TGTCCATTCTGCTGCTCAGCCAGATCGGCGAGCAGATGGCGGCCAGCATCAGGCAGGACC
TGTTCAAGCAGATCATCATCCAAGATCTGGAGTTTTTCGACCACAATCGTACCGGCGAGC
TGGTCAACCGGCTGACCGCGGACGTGCAAGATTTCAAGTCCAGCTTCAAGCAGTGCATCT
CGCAGGGTTTGCGCAGCTTCGCCCAGCTCGTCGGCGGTGGCATTTCCCTGTTCTGGATCT
CGCCCCAGCTGGCCAGCATTGCGCTCGTGTCGGTCCCGGTAGCGGTGGCCATGTTTTCCC
TGCTCGGTCGCTCCCTGCGCCACCTAAGCAAAAAAGCCCAGGCCCAATCGGAGCGAGCCA
CATCGGTGGGAGTGAGGGAGGCACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2975#0      CCGGCGAAAGTGTTGCGTTGTTTTCAAACCAACCGGACACAAGAAGCGTCCACCGAGCGC 60
consensus_2975#1      --------------------------------CCGCCCAC-----GCGTCCGCCCA-CGC 22
                                                      ***  ***     ****** ** * ***

consensus_2975#0      GGCCAACAATCCGTGGCTTACGAGCTACGCCCGGACGTGTTTTGCAGTGGTTTCGTGAGC 120
consensus_2975#1      GTCCGTGGGCA---AGCTGATTGGTGCCGTTATGGCTGCCCTTGCCGTGGCATATT--TC 77
                      * **           *** *   *   **    * *     **** ****  *  *   *

consensus_2975#0      AATGCTGAAGTTGCTACTCTCCCCGCACCGACAATGTTGCTGGCAGGGACTGACACGGTC 180
consensus_2975#1      AACATTCAAATACCGAATCTGCTCGGAGTGA-----TCGTTAACAAG--CTGGCCCGGTA 130
                      **   * ** *  * * *** * ** *  **     * * *  ** *  *** * **** 

consensus_2975#0      TTCTCCATACAGCACGGAAGGAAAGCATGTGCTGCTCCGCAAGACGGTTCAATCGTTCGG 240
consensus_2975#1      TGC---AGGCAGCA-GCATTAAAGACAT---CAATACCGCAAGC---TTCTTTCG---GG 177
                      * *   *  ***** * *   **  ***   *    *******    ***  ***   **

consensus_2975#0      ACTGGGGAGGAATGGATTCCTGCAACCGATCCGGAACACCATTCAGCGGACGGTGGTCCG 300
consensus_2975#1      ACATGCGGGGCCCTG--CGCTGCAGCTGTTCGG------CATGTATCTGGCC-CAGTCCG 228
                      **  * * **    *    ***** * * ** *      ***  * * * *    *****

consensus_2975#0      GCCCTCGCACACGGTTACGAAAACCGGTTCACAGGGATCGCGA-CTGATAAGGGT-GCTG 358
consensus_2975#1      GCTTTACCTTCCTGTCCATTCTGCTGCTCAGCCAGATCGGCGAGCAGATGGCGGCCAGCA 288
                      **  *  *   * **        * * *   *  *    **** * ***   **      

consensus_2975#0      CTGGGTGGAACGGTCGTAAGCATCACGCTGGGCTATCAGTACCGGAAGTCGTTCGTGCAC 418
consensus_2975#1      TCAGGCAGGACCTGTTCAAGCA----GATCATCATCCAAGATCTGGAGTTTTTCGACCAC 344
                         **  * **      *****    * *   *   **  * * * ***  ****  ***

consensus_2975#0      TGTGAGGCGTCCGTAAACCGGCTGGCCGGCCAGCGGCAGCTAGTGGACGACGGGGCGGTG 478
consensus_2975#1      AATC--GTACCGGCGAGCTGGTCAACCGGCTGACCGCGGAC-GTGCAAGATTTCAAGTCC 401
                        *   *   * *  * * **    *****   * ** *   *** * **      *   

consensus_2975#0      CGTTTCGATTGGTGGAAGTTTTGGCATTACCTGAGGCGGCATTTGGGCAAGCTGATTGGT 538
consensus_2975#1      AGCTTCAAGCAGTGCA---TCTCGCAGGGTTTG---CGCAGCTTCGCCCAGCTCGTCGGC 455
                       * *** *   *** *   * * ***     **   **    ** * * ****  * ** 

consensus_2975#0      GCCGTTATGGCTGCCCTTGCCGTGGCATATTTCAACATTCAAATACCGAATCTGC-TCGG 597
consensus_2975#1      GGTGGCAT--TTCCCTGTTCTGGATCTCGCCCCAGCTGGCCAGCATTGCGCTCGTGTCGG 513
                      *  *  **   * **  * * *   *      ** *   * *  *  *     *  ****

consensus_2975#0      ----AGTGATCGTTAACAAGCTGGCCCGGTATGCAGGCAGCA-GCATTAAAGACATCAAT 652
consensus_2975#1      TCCCGGTAGCGGTGGCCATGTTTTCCCTGCTCGGTCGCTCCCTGCGCCACCTAAGCAAAA 573
                           **    **   ** * *  *** *   *   **  *  **   *   *    ** 

consensus_2975#0      ACCGCAAGCTTCTTTCGGGACATGCGGGGCCC-TGGCGCTGCA---------- 694
consensus_2975#1      AAGCCCAGGCCCAATCGGAGCGAGCCACATCGGTGGGAGTGAGGGAGGCACTG 626
                      *   * **   *  ****  *  **     *  ***   **