cluster # 2984

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Anopheles gambiae
cluster # 2984 cluster # 2984 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2984#0 length = 615 sequences # 1

consensus_2984#1 length = 564 sequences # 1

consensusID : consensus_2984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [CCGCTACATCTATCCGATCGGCTACAAAATTATTCGCTTCTACTGGTCCATGCGCCGTCCGAACAAGCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTTCCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCAACGCCGAAAGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCACAGCTGCGCAAGAGCTGCCAGATCGTGCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGTCGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTATGGGCGCAACCCACTGCTCGAACTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCACCGAACCGAAGCTGAAGCACACACTGTCGTGGAAGAAACCGCACACGCAGCGGACCGGATCGGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCCGTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTGGCGCAACAACGTGTTCCT]

[+] EMBL BM578252             [CCGCTACATCTATCCGATCGGCTACAAAATTATTCGCTTCTACTGGTCCATGCGCCGTCCGAACAAGCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTTCCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCAACGCCGAAAGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCACAGCTGCGCAAGAGCTGCCAGATCGTGCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGTCGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTATGGGCGCAACCCACTGCTCGAACTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCACCGAACCGAAGCTGAAGCACACACTGTCGTGGAAGAAACCGCACACGCAGCGGACCGGATCGGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCCGTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTGGCGCAACAACGTGTTCCT]




>consensus_2984#0
CCGCTACATCTATCCGATCGGCTACAAAATTATTCGCTTCTACTGGTCCATGCGCCGTCC
GAACAAGCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTTCCG
CGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCAACGCCGAAAGC
CGTCTGGCAGCGGATCCTCGAGCCGATGGCACAGCTGCGCAAGAGCTGCCAGATCGTGCA
GCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGTCGT
GCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTATGG
GCGCAACCCACTGCTCGAACTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCACCGA
ACCGAAGCTGAAGCACACACTGTCGTGGAAGAAACCGCACACGCAGCGGACCGGATCGGT
CAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCCGTA
CAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTGGCG
CAACAACGTGTTCCT

consensusID : consensus_2984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CGACCCACGCGTCCGCCCACGCGTCCGCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTTCCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCGACGCCGAAAGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCGCAGCTGCGCAAGAGCTGCCAGATCGTGCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGTCGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTATGGGCGCAACCCACTGCTCGAGCTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCACCGAGCCGAAGCTGAAGCACACACTGTCGTGGAAGAAGCCACACACGCAGCGTACCGGATCGGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCCGTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTGGCGCAAC]

[+] EMBL BM642823             [CGACCCACGCGTCCGCCCACGCGTCCGCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTTCCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCGACGCCGAAAGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCGCAGCTGCGCAAGAGCTGCCAGATCGTGCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGTCGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTATGGGCGCAACCCACTGCTCGAGCTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCACCGAGCCGAAGCTGAAGCACACACTGTCGTGGAAGAAGCCACACACGCAGCGTACCGGATCGGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCCGTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTGGCGCAAC]




>consensus_2984#1
CGACCCACGCGTCCGCCCACGCGTCCGCGCTGCCGGTACATCTGCTCGATCGCGGACGTG
TGCGGCCGGCCCGAGTTCCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTG
CGCGACGCGACGCCGAAAGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCGCAGCTGCGC
AAGAGCTGCCAGATCGTGCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGG
CTGACCGAGCCCGCGGTCGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACC
GACTACCGGTTCAAGTATGGGCGCAACCCACTGCTCGAGCTGCCGCTCGCCATCAATCCG
TCCGGTGCGGCCCGCACCGAGCCGAAGCTGAAGCACACACTGTCGTGGAAGAAGCCACAC
ACGCAGCGTACCGGATCGGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCC
GGCGAGGTGGCCTGCCCGTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAG
AAGATGAAGCAGGAGTGGCGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2984#0      CCGCTACATCTATCCGATCGGCTACAAAATTATTCGCTTCTACTGGTCCATGCG-CCGTC 59
consensus_2984#1      -------------------------------------------CGACCCACGCGTCCGCC 17
                                                                  *  *** *** *** *

consensus_2984#0      CGAACAA--GCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTT 117
consensus_2984#1      CACGCGTCCGCGCTGCCGGTACATCTGCTCGATCGCGGACGTGTGCGGCCGGCCCGAGTT 77
                      *   *    ***************************************************

consensus_2984#0      CCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCAACGCCGAA 177
consensus_2984#1      CCGCGTGCTGGTGCAGGAGACGGCCGAGGAGGACATCGAGCTGCGCGACGCGACGCCGAA 137
                      *************************************************** ********

consensus_2984#0      AGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCACAGCTGCGCAAGAGCTGCCAGATCGT 237
consensus_2984#1      AGCCGTCTGGCAGCGGATCCTCGAGCCGATGGCGCAGCTGCGCAAGAGCTGCCAGATCGT 197
                      ********************************* **************************

consensus_2984#0      GCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGT 297
consensus_2984#1      GCAGCTCTTCCCGAAGTACATCTCGGGCGAGGATCTGTTCGGGCTGACCGAGCCCGCGGT 257
                      ************************************************************

consensus_2984#0      CGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTA 357
consensus_2984#1      CGTGCGCATCCTGGAGAGCCTGCCCGGCATCGAAACGCTCACCGACTACCGGTTCAAGTA 317
                      ************************************************************

consensus_2984#0      TGGGCGCAACCCACTGCTCGAACTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCAC 417
consensus_2984#1      TGGGCGCAACCCACTGCTCGAGCTGCCGCTCGCCATCAATCCGTCCGGTGCGGCCCGCAC 377
                      ********************* **************************************

consensus_2984#0      CGAACCGAAGCTGAAGCACACACTGTCGTGGAAGAAACCGCACACGCAGCGGACCGGATC 477
consensus_2984#1      CGAGCCGAAGCTGAAGCACACACTGTCGTGGAAGAAGCCACACACGCAGCGTACCGGATC 437
                      *** ******************************** ** *********** ********

consensus_2984#0      GGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCC 537
consensus_2984#1      GGTCAGCCAGCGGCCCACGTTCGTGCCGACCAGCTCGCCGGCCGGCGAGGTGGCCTGCCC 497
                      ************************************************************

consensus_2984#0      GTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTG 597
consensus_2984#1      GTACAGCAAGCAGTTCGTGCACTCGAAGAGCTCGCAGTACAAGAAGATGAAGCAGGAGTG 557
                      ************************************************************

consensus_2984#0      GCGCAACAACGTGTTCCT 615
consensus_2984#1      GCGCAAC----------- 564
                      *******