cluster # 2987

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Anopheles gambiae
cluster # 2987 cluster # 2987 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2987#0 length = 623 sequences # 1

consensus_2987#1 length = 527 sequences # 1

consensusID : consensus_2987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGTTTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTACGTTACATGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCCCGTGCGTCGTCGTCCTACTTACCCCCTTTTCATTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTCTGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCCAGTAGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATGCCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGTTTATTGTTTTGTTCGGTTTTAGTTTTGACTTTTTGCGTTTCTGAAATAACAATGTGAGATTAAAAAGACCTACTGGGAGAGCGAATGGAATTACTAATTAAAAAATAATAATCTAGGAATTAGGAGGGAGAGAGACAGCTCTGTATGAATGGATTGTTTTGTGTGTGTATGCGTGTGT]

[+] EMBL BM641383             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGTTTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTACGTTACATGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCCCGTGCGTCGTCGTCCTACTTACCCCCTTTTCATTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTCTGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCCAGTAGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATGCCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGTTTATTGTTTTGTTCGGTTTTAGTTTTGACTTTTTGCGTTTCTGAAATAACAATGTGAGATTAAAAAGACCTACTGGGAGAGCGAATGGAATTACTAATTAAAAAATAATAATCTAGGAATTAGGAGGGAGAGAGACAGCTCTGTATGAATGGATTGTTTTGTGTGTGTATGCGTGTGT]




>consensus_2987#0
CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAA
GATTATTTGTACCATTTTGTTTTGTTTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTC
CAGTCGTAGAGAATTATTAGCGTACGTTACATGTACGTCGTATCGTTGCCGTGTGTTCGT
TGTTCTATCCGTGCCCGTGCGTCGTCGTCCTACTTACCCCCTTTTCATTTGTCGCATATA
CGCGCGCAGTCGAAGGCAGCCTTTCTGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGC
CACCAACCAAATGACAGCTAAAGCCAGTAGCTAATCCAGCTGATGATCCGCATTCGTGCT
TTCCATAGACTTAATAATGCTAATGCCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGT
TCTCTATATTGTTTTGTTTTAATGTTTATTGTTTTGTTCGGTTTTAGTTTTGACTTTTTG
CGTTTCTGAAATAACAATGTGAGATTAAAAAGACCTACTGGGAGAGCGAATGGAATTACT
AATTAAAAAATAATAATCTAGGAATTAGGAGGGAGAGAGACAGCTCTGTATGAATGGATT
GTTTTGTGTGTGTATGCGTGTGT

consensusID : consensus_2987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [CCGCAAAAAACGCAACATAACTTTACAAACTAAGTCACACAAAAGAAGAAACACAAGGAAGTGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGTTTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTACGTTACACGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCCGCGTCGTCGTCCTACTTACCCCTTTTTCTTTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTCTGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCCAGTAGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATGCCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGGTTATTGTTTTGTTCGGTTTTAATTTTGCGTTTCTGAAATAACAATGTGAG]

[+] EMBL BM642297             [CCGCAAAAAACGCAACATAACTTTACAAACTAAGTCACACAAAAGAAGAAACACAAGGAAGTGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGTTTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTACGTTACACGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCCGCGTCGTCGTCCTACTTACCCCTTTTTCTTTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTCTGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCCAGTAGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATGCCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGGTTATTGTTTTGTTCGGTTTTAATTTTGCGTTTCTGAAATAACAATGTGAG]




>consensus_2987#1
CCGCAAAAAACGCAACATAACTTTACAAACTAAGTCACACAAAAGAAGAAACACAAGGAA
GTGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGT
TTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTAC
GTTACACGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCCGCGTCGTCGT
CCTACTTACCCCTTTTTCTTTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTCTGC
CCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCCAGT
AGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATGCCG
CCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGGTTA
TTGTTTTGTTCGGTTTTAATTTTGCGTTTCTGAAATAACAATGTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2987#0      ----------------------------------CCGCCCACGCGTCCGCCCACGCGTCC 26
consensus_2987#1      CCGCAAAAAACGCAACATAACTTTACAAACTAAGTCACACAAAAGAAGAAACACAAGGAA 60
                                                         * * **   *      ***  *   

consensus_2987#0      G-GTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGT 85
consensus_2987#1      GTGTTTGATGGAAGAGATGTTTCAGCAGGGGAAAAGATTATTTGTACCATTTTGTTTTGT 120
                      * **********************************************************

consensus_2987#0      TTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTAC 145
consensus_2987#1      TTTTTACCTTAAGCACGCTATTTCGTGCCGCTCTCCAGTCGTAGAGAATTATTAGCGTAC 180
                      ************************************************************

consensus_2987#0      GTTACATGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCCCGTGCGTCGT 205
consensus_2987#1      GTTACACGTACGTCGTATCGTTGCCGTGTGTTCGTTGTTCTATCCGTGCC---GCGTCGT 237
                      ****** *******************************************   *******

consensus_2987#0      CGTCCTACTTACCCCCTTTTCATTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTC 265
consensus_2987#1      CGTCCTACTTACCCCTTTTTCTTTTGTCGCATATACGCGCGCAGTCGAAGGCAGCCTTTC 297
                      *************** ***** **************************************

consensus_2987#0      TGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCC 325
consensus_2987#1      TGCCCCAGCGTTTATGTAAGAAGGTCCCTTGCGGCCACCAACCAAATGACAGCTAAAGCC 357
                      ************************************************************

consensus_2987#0      AGTAGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATG 385
consensus_2987#1      AGTAGCTAATCCAGCTGATGATCCGCATTCGTGCTTTCCATAGACTTAATAATGCTAATG 417
                      ************************************************************

consensus_2987#0      CCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGT 445
consensus_2987#1      CCGCCAGCAGCATCTCGTACCTCGTCGTCCAAGGTTCTCTATATTGTTTTGTTTTAATGG 477
                      *********************************************************** 

consensus_2987#0      TTATTGTTTTGTTCGGTTTTAGTTTTGACTTTTTGCGTTTCTGAAATAACAATGTGAGAT 505
consensus_2987#1      TTATTGTTTTGTTCGGTTTTAAT--------TTTGCGTTTCTGAAATAACAATGTGAG-- 527
                      ********************* *        ***************************  

consensus_2987#0      TAAAAAGACCTACTGGGAGAGCGAATGGAATTACTAATTAAAAAATAATAATCTAGGAAT 565
consensus_2987#1      ------------------------------------------------------------
                                                                                  

consensus_2987#0      TAGGAGGGAGAGAGACAGCTCTGTATGAATGGATTGTTTTGTGTGTGTATGCGTGTGT 623
consensus_2987#1      ----------------------------------------------------------