cluster # 2999

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Anopheles gambiae
cluster # 2999 cluster # 2999 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2999#0 length = 592 sequences # 1

consensus_2999#1 length = 379 sequences # 1

consensusID : consensus_2999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [GCCTGTTTTTTTTTTTTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTAGTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCCGGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCACGCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAGCGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAACCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTTTTTTTCATTAGCATCGTTTAGTAATGGTTAGATCGAAAGAGGAAGACGGAAAACAAAAGATACAACAGTTATGTTGATGCTACATGGCCGATATGAATCCTAGGATGTATGTTTAATTTATTAAAGCAATTAATAAAATTGTTTTGAAAATATACCACTAATATTACGCTTAGTATCATCTTTGCTTGNATTTGTTTGTGTATTTGTGCAAACGTTACCACAGATTAGTAGATTGGCGCCTTTGCGTA]

[+] EMBL BX624998             [GCCTGTTTTTTTTTTTTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTAGTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCCGGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCACGCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAGCGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAACCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTTTTTTTCATTAGCATCGTTTAGTAATGGTTAGATCGAAAGAGGAAGACGGAAAACAAAAGATACAACAGTTATGTTGATGCTACATGGCCGATATGAATCCTAGGATGTATGTTTAATTTATTAAAGCAATTAATAAAATTGTTTTGAAAATATACCACTAATATTACGCTTAGTATCATCTTTGCTTGNATTTGTTTGTGTATTTGTGCAAACGTTACCACAGATTAGTAGATTGGCGCCTTTGCGTA]




>consensus_2999#0
GCCTGTTTTTTTTTTTTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTA
GTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCC
GGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCAC
GCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAG
CGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAA
CCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTTTTTTTCATTAGCATCG
TTTAGTAATGGTTAGATCGAAAGAGGAAGACGGAAAACAAAAGATACAACAGTTATGTTG
ATGCTACATGGCCGATATGAATCCTAGGATGTATGTTTAATTTATTAAAGCAATTAATAA
AATTGTTTTGAAAATATACCACTAATATTACGCTTAGTATCATCTTTGCTTGNATTTGTT
TGTGTATTTGTGCAAACGTTACCACAGATTAGTAGATTGGCGCCTTTGCGTA

consensusID : consensus_2999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [CTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTAGTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCCGGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCACGCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAGCGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAACCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTCTTTCGATCTAACCATTACTAAACGATGCTAATGGTTAGATCGAAAGAGGA]

[-] EMBL BX628326             [CTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTAGTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCCGGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCACGCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAGCGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAACCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTCTTTCGATCTAACCATTACTAAACGATGCTAATGGTTAGATCGAAAGAGGA]




>consensus_2999#1
CTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTAGTTTTCATTCGTACT
CGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCCGGAGTAAGTATTATA
AATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCACGCATTGACATTCTAC
ACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAGCGTACAGATACAGAC
AAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAACCGTTACTGCCTAGA
GCCGTTCACAAAAATGCAAAACAAACCTCTTTCGATCTAACCATTACTAAACGATGCTAA
TGGTTAGATCGAAAGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2999#0      GCCTGTTTTTTTTTTTTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTA 60
consensus_2999#1      ---------------CTTTTTTTATTTATTAGAAATATGTGTTTGCTCTTTCCTTTGCTA 45
                                      ********************************************

consensus_2999#0      GTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCC 120
consensus_2999#1      GTTTTCATTCGTACTCGTTTGTTGAGTTTCGCTTCCGCTTATACGTTCGATACCCCCGCC 105
                      ************************************************************

consensus_2999#0      GGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCAC 180
consensus_2999#1      GGAGTAAGTATTATAAATTATAAAAAAGTACTACAGATAAATGTTTTTTGTTTATGCCAC 165
                      ************************************************************

consensus_2999#0      GCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAG 240
consensus_2999#1      GCATTGACATTCTACACAACAATCCGATGGGATGGAAATCAGCAAAACTGATATGAAAAG 225
                      ************************************************************

consensus_2999#0      CGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAA 300
consensus_2999#1      CGTACAGATACAGACAAATTTGACACGAAACACGTAAAAAAGAGCAACTCATAGTTTGAA 285
                      ************************************************************

consensus_2999#0      CCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTTTTTT-------TCATT 353
consensus_2999#1      CCGTTACTGCCTAGAGCCGTTCACAAAAATGCAAAACAAACCTCTTTCGATCTAACCATT 345
                      ******************************************* ***         ****

consensus_2999#0      AGCATCGTTTAGTAATGGTTAGATCGAAAGAGGAAGACGGAAAACAAAAGATACAACAGT 413
consensus_2999#1      ACTAAACGATGCTAATGGTTAGATCGAAAGAGGA-------------------------- 379
                      *  *     *  **********************                          

consensus_2999#0      TATGTTGATGCTACATGGCCGATATGAATCCTAGGATGTATGTTTAATTTATTAAAGCAA 473
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      TTAATAAAATTGTTTTGAAAATATACCACTAATATTACGCTTAGTATCATCTTTGCTTGN 533
consensus_2999#1      ------------------------------------------------------------
                                                                                  

consensus_2999#0      ATTTGTTTGTGTATTTGTGCAAACGTTACCACAGATTAGTAGATTGGCGCCTTTGCGTA 592
consensus_2999#1      -----------------------------------------------------------